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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0020910 through 18771 annotations produced 3 hits



Ribosomal protein L3 (RpL3):

Annotation Number : CG4863
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020910
Gbrowse : chr3R:7047890-7049171 (+) // 100.0 //
Probeset : 1625889_at
Accessions : protein= NP_524316; /// NP_731547; /// NP_731548; /// NP_731549; /// NP_731550;, nucleotide= NM_079592; /// NM_169377; /// NM_169378; /// NM_169379; /// NM_169380;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic ann
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0020910.
BDGP gene expression has embryonic in situ data for RpL3: 32 pix of staining in 21 body parts.
BioGrid reports that CG4863 interacts with CG4896 CG4998 CG5053 CG5346 CG6378 CG6443 CG6621 CG7196 CG7524 CG7570 CG7809 CG8349 CG8764 CG8942 CG9572 .
TRiP has 1 RNAi stocks for FBgn0020910 available for purchase.
VDRC has 4 RNAi stocks for FBgn0020910 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain66 34 of 4 0.50Down
Head57 64 of 4 0.50Down
Eye31 34 of 4 0.26Down
Thoracicoabdominal ganglion38 44 of 4 0.30Down
Salivary gland125 54 of 4 1.03None
Crop107 64 of 4 0.90None
Midgut141 104 of 4 1.20None
Tubule43 74 of 4 0.40Down
Hindgut59 34 of 4 0.50Down
Heart61 54 of 4 0.51Down
Fat body97 264 of 4 0.80None
Ovary153 64 of 4 1.30Up
Testis8 01 of 4 0.10Down
Male accessory glands321 504 of 4 2.60Up
Virgin spermatheca27 24 of 4 0.23Down
Mated spermatheca31 44 of 4 0.26Down
Adult carcass86 44 of 4 0.70Down
Larval CNS107 84 of 4 0.89None
Larval Salivary gland142 84 of 4 1.17None
Larval midgut35 24 of 4 0.29Down
Larval tubule36 54 of 4 0.30Down
Larval hindgut66 104 of 4 0.54Down
Larval fat body41 34 of 4 0.30Down
Larval trachea151 174 of 4 1.24Up
Larval carcass145 184 of 4 1.20None
S2 cells (growing)461 224 of 4 3.79Up
Whole fly121 74 of 4



Ribosomal protein L3 (RpL3):

Annotation Number : CG4863
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020910
Gbrowse : chr3R:7047617-7048738 (+) // 100.0 //
Probeset : 1634685_at
Accessions : protein= NP_524316; /// NP_731547; /// NP_731548; /// NP_731549; /// NP_731550;, nucleotide= NM_079592; /// NM_169377; /// NM_169378; /// NM_169379; /// NM_169380;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic ann
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0020910.
BDGP gene expression has embryonic in situ data for RpL3: 32 pix of staining in 21 body parts.
BioGrid reports that CG4863 interacts with CG4896 CG4998 CG5053 CG5346 CG6378 CG6443 CG6621 CG7196 CG7524 CG7570 CG7809 CG8349 CG8764 CG8942 CG9572 .
TRiP has 1 RNAi stocks for FBgn0020910 available for purchase.
VDRC has 4 RNAi stocks for FBgn0020910 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain21 24 of 4 1.10None
Head7 22 of 4 0.40Down
Eye4 10 of 4 0.21Down
Thoracicoabdominal ganglion15 14 of 4 0.80None
Salivary gland28 54 of 4 1.47None
Crop13 33 of 4 0.70None
Midgut17 01 of 4 0.90None
Tubule5 10 of 4 0.30Down
Hindgut12 03 of 4 0.60Down
Heart6 11 of 4 0.31Down
Fat body19 64 of 4 1.00None
Ovary21 14 of 4 1.10None
Testis14 14 of 4 0.80None
Male accessory glands34 14 of 4 1.80Up
Virgin spermatheca11 14 of 4 0.61Down
Mated spermatheca11 12 of 4 0.58Down
Adult carcass19 31 of 4 1.00None
Larval CNS21 14 of 4 1.11None
Larval Salivary gland32 34 of 4 1.69Up
Larval midgut7 10 of 4 0.37Down
Larval tubule4 10 of 4 0.20Down
Larval hindgut12 23 of 4 0.64None
Larval fat body13 12 of 4 0.70None
Larval trachea9 14 of 4 0.46Down
Larval carcass15 33 of 4 0.78None
S2 cells (growing)34 14 of 4 1.77Up
Whole fly19 24 of 4



Ribosomal protein L3 (RpL3):

Annotation Number : CG4863
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020910
Gbrowse : chr3R:7047617-7050897 (+) // 100.0 //
Probeset : 1630270_s_at
Accessions : protein= NP_524316; /// NP_731547; /// NP_731548; /// NP_731549; /// NP_731550;, nucleotide= NM_079592; /// NM_169377; /// NM_169378; /// NM_169379; /// NM_169380;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic ann
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0020910.
BDGP gene expression has embryonic in situ data for RpL3: 32 pix of staining in 21 body parts.
BioGrid reports that CG4863 interacts with CG4896 CG4998 CG5053 CG5346 CG6378 CG6443 CG6621 CG7196 CG7524 CG7570 CG7809 CG8349 CG8764 CG8942 CG9572 .
TRiP has 1 RNAi stocks for FBgn0020910 available for purchase.
VDRC has 4 RNAi stocks for FBgn0020910 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2819 354 of 4 0.70Down
Head4527 1874 of 4 1.20None
Eye5265 944 of 4 1.38Up
Thoracicoabdominal ganglion3835 1134 of 4 1.00None
Salivary gland10746 2754 of 4 2.81Up
Crop5901 2644 of 4 1.50Up
Midgut4958 544 of 4 1.30Up
Tubule4943 934 of 4 1.30Up
Hindgut4937 944 of 4 1.30Up
Heart5755 3504 of 4 1.51Up
Fat body5149 11184 of 4 1.35None
Ovary2936 414 of 4 0.80Down
Testis732 584 of 4 0.20Down
Male accessory glands9012 2784 of 4 2.40Up
Virgin spermatheca4664 2064 of 4 1.22Up
Mated spermatheca4648 1644 of 4 1.22Up
Adult carcass5570 2814 of 4 1.50Up
Larval CNS2209 1084 of 4 0.58Down
Larval Salivary gland7179 3654 of 4 1.88Up
Larval midgut4449 974 of 4 1.16None
Larval tubule4707 524 of 4 1.20Up
Larval hindgut4105 734 of 4 1.07None
Larval fat body7127 7944 of 4 1.90Up
Larval trachea5193 2104 of 4 1.36Up
Larval carcass4143 4004 of 4 1.08None
S2 cells (growing)3821 1404 of 4 1.00None
Whole fly3824 2434 of 4

Looking for FBgn0020910. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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