FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0020910 through 18771 annotations produced 3 hits

Ribosomal protein L3 (RpL3):

Annotation Number : CG4863
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020910
Gbrowse : chr3R:7047890-7049171 (+) // 100.0 //
Probeset : 1625889_at
Accessions : protein= NP_524316; /// NP_731547; /// NP_731548; /// NP_731549; /// NP_731550;, nucleotide= NM_079592; /// NM_169377; /// NM_169378; /// NM_169379; /// NM_169380;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic ann
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0020910.
BDGP gene expression has embryonic in situ data for RpL3: 32 pix of staining in 21 body parts.
BioGrid reports that CG4863 interacts with CG4896 CG4998 CG5053 CG5346 CG6378 CG6443 CG6621 CG7196 CG7524 CG7570 CG7809 CG8349 CG8764 CG8942 CG9572 .
TRiP has 1 RNAi stocks for FBgn0020910 available for purchase.
VDRC has 4 RNAi stocks for FBgn0020910 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	66 ± 3	4 of 4	0.50	Down
Head	57 ± 6	4 of 4	0.50	Down
Eye	31 ± 3	4 of 4	0.26	Down
Thoracicoabdominal ganglion	38 ± 4	4 of 4	0.30	Down
Salivary gland	125 ± 5	4 of 4	1.03	None
Crop	107 ± 6	4 of 4	0.90	None
Midgut	141 ± 10	4 of 4	1.20	None
Tubule	43 ± 7	4 of 4	0.40	Down
Hindgut	59 ± 3	4 of 4	0.50	Down
Heart	61 ± 5	4 of 4	0.51	Down
Fat body	97 ± 26	4 of 4	0.80	None
Ovary	153 ± 6	4 of 4	1.30	Up
Testis	8 ± 0	1 of 4	0.10	Down
Male accessory glands	321 ± 50	4 of 4	2.60	Up
Virgin spermatheca	27 ± 2	4 of 4	0.23	Down
Mated spermatheca	31 ± 4	4 of 4	0.26	Down
Adult carcass	86 ± 4	4 of 4	0.70	Down
Larval CNS	107 ± 8	4 of 4	0.89	None
Larval Salivary gland	142 ± 8	4 of 4	1.17	None
Larval midgut	35 ± 2	4 of 4	0.29	Down
Larval tubule	36 ± 5	4 of 4	0.30	Down
Larval hindgut	66 ± 10	4 of 4	0.54	Down
Larval fat body	41 ± 3	4 of 4	0.30	Down
Larval trachea	151 ± 17	4 of 4	1.24	Up
Larval carcass	145 ± 18	4 of 4	1.20	None
S2 cells (growing)	461 ± 22	4 of 4	3.79	Up
Whole fly	121 ± 7	4 of 4

Ribosomal protein L3 (RpL3):

Annotation Number : CG4863
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020910
Gbrowse : chr3R:7047617-7050897 (+) // 100.0 //
Probeset : 1630270_s_at
Accessions : protein= NP_524316; /// NP_731547; /// NP_731548; /// NP_731549; /// NP_731550;, nucleotide= NM_079592; /// NM_169377; /// NM_169378; /// NM_169379; /// NM_169380;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic ann
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0020910.
BDGP gene expression has embryonic in situ data for RpL3: 32 pix of staining in 21 body parts.
BioGrid reports that CG4863 interacts with CG4896 CG4998 CG5053 CG5346 CG6378 CG6443 CG6621 CG7196 CG7524 CG7570 CG7809 CG8349 CG8764 CG8942 CG9572 .
TRiP has 1 RNAi stocks for FBgn0020910 available for purchase.
VDRC has 4 RNAi stocks for FBgn0020910 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2819 ± 35	4 of 4	0.70	Down
Head	4527 ± 187	4 of 4	1.20	None
Eye	5265 ± 94	4 of 4	1.38	Up
Thoracicoabdominal ganglion	3835 ± 113	4 of 4	1.00	None
Salivary gland	10746 ± 275	4 of 4	2.81	Up
Crop	5901 ± 264	4 of 4	1.50	Up
Midgut	4958 ± 54	4 of 4	1.30	Up
Tubule	4943 ± 93	4 of 4	1.30	Up
Hindgut	4937 ± 94	4 of 4	1.30	Up
Heart	5755 ± 350	4 of 4	1.51	Up
Fat body	5149 ± 1118	4 of 4	1.35	None
Ovary	2936 ± 41	4 of 4	0.80	Down
Testis	732 ± 58	4 of 4	0.20	Down
Male accessory glands	9012 ± 278	4 of 4	2.40	Up
Virgin spermatheca	4664 ± 206	4 of 4	1.22	Up
Mated spermatheca	4648 ± 164	4 of 4	1.22	Up
Adult carcass	5570 ± 281	4 of 4	1.50	Up
Larval CNS	2209 ± 108	4 of 4	0.58	Down
Larval Salivary gland	7179 ± 365	4 of 4	1.88	Up
Larval midgut	4449 ± 97	4 of 4	1.16	None
Larval tubule	4707 ± 52	4 of 4	1.20	Up
Larval hindgut	4105 ± 73	4 of 4	1.07	None
Larval fat body	7127 ± 794	4 of 4	1.90	Up
Larval trachea	5193 ± 210	4 of 4	1.36	Up
Larval carcass	4143 ± 400	4 of 4	1.08	None
S2 cells (growing)	3821 ± 140	4 of 4	1.00	None
Whole fly	3824 ± 243	4 of 4

Ribosomal protein L3 (RpL3):

Annotation Number : CG4863
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020910
Gbrowse : chr3R:7047617-7048738 (+) // 100.0 //
Probeset : 1634685_at
Accessions : protein= NP_524316; /// NP_731547; /// NP_731548; /// NP_731549; /// NP_731550;, nucleotide= NM_079592; /// NM_169377; /// NM_169378; /// NM_169379; /// NM_169380;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic ann
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0020910.
BDGP gene expression has embryonic in situ data for RpL3: 32 pix of staining in 21 body parts.
BioGrid reports that CG4863 interacts with CG4896 CG4998 CG5053 CG5346 CG6378 CG6443 CG6621 CG7196 CG7524 CG7570 CG7809 CG8349 CG8764 CG8942 CG9572 .
TRiP has 1 RNAi stocks for FBgn0020910 available for purchase.
VDRC has 4 RNAi stocks for FBgn0020910 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	21 ± 2	4 of 4	1.10	None
Head	7 ± 2	2 of 4	0.40	Down
Eye	4 ± 1	0 of 4	0.21	Down
Thoracicoabdominal ganglion	15 ± 1	4 of 4	0.80	None
Salivary gland	28 ± 5	4 of 4	1.47	None
Crop	13 ± 3	3 of 4	0.70	None
Midgut	17 ± 0	1 of 4	0.90	None
Tubule	5 ± 1	0 of 4	0.30	Down
Hindgut	12 ± 0	3 of 4	0.60	Down
Heart	6 ± 1	1 of 4	0.31	Down
Fat body	19 ± 6	4 of 4	1.00	None
Ovary	21 ± 1	4 of 4	1.10	None
Testis	14 ± 1	4 of 4	0.80	None
Male accessory glands	34 ± 1	4 of 4	1.80	Up
Virgin spermatheca	11 ± 1	4 of 4	0.61	Down
Mated spermatheca	11 ± 1	2 of 4	0.58	Down
Adult carcass	19 ± 3	1 of 4	1.00	None
Larval CNS	21 ± 1	4 of 4	1.11	None
Larval Salivary gland	32 ± 3	4 of 4	1.69	Up
Larval midgut	7 ± 1	0 of 4	0.37	Down
Larval tubule	4 ± 1	0 of 4	0.20	Down
Larval hindgut	12 ± 2	3 of 4	0.64	None
Larval fat body	13 ± 1	2 of 4	0.70	None
Larval trachea	9 ± 1	4 of 4	0.46	Down
Larval carcass	15 ± 3	3 of 4	0.78	None
S2 cells (growing)	34 ± 1	4 of 4	1.77	Up
Whole fly	19 ± 2	4 of 4

Looking for FBgn0020910. 3 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720