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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0021765 through 18771 annotations produced 2 hits



scully (scu):

Annotation Number : CG7113
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0021765
Gbrowse : chrX:17985278-17986888 (+) // 100.0 //
Probeset : 1634433_at
Accessions : protein= NP_523396;, nucleotide= NM_078672;
Pathway : 0005739 // mitochondrion // non-traceable author statement /// 0005739 // mitochondrion // inferred from electronic anno
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0003857 // 3-hydroxyacyl-CoA dehydrogenase acti
FlyMine data for FBgn0021765.
Homophila reports that CG7113 is a close match (6e-11) to human gene RDH5 (NP_002896), a gene associated with Fundus albipunctatus, 136880 (3).
TRiP has 2 RNAi stocks for FBgn0021765 available for purchase.
VDRC has 2 RNAi stocks for FBgn0021765 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain255 94 of 4 0.20Down
Head1436 684 of 4 1.10None
Eye815 484 of 4 0.65Down
Thoracicoabdominal ganglion315 104 of 4 0.30Down
Salivary gland441 104 of 4 0.35Down
Crop1806 414 of 4 1.40Up
Midgut551 304 of 4 0.40Down
Tubule1483 394 of 4 1.20Up
Hindgut1939 274 of 4 1.50Up
Heart2561 1614 of 4 2.03Up
Fat body3081 2104 of 4 2.44Up
Ovary1315 154 of 4 1.00None
Testis124 34 of 4 0.10Down
Male accessory glands563 94 of 4 0.40Down
Virgin spermatheca2198 694 of 4 1.74Up
Mated spermatheca2278 754 of 4 1.80Up
Adult carcass2539 884 of 4 2.00Up
Larval CNS806 544 of 4 0.64Down
Larval Salivary gland1542 884 of 4 1.22Up
Larval midgut1078 124 of 4 0.85Down
Larval tubule2322 1624 of 4 1.80Up
Larval hindgut1548 324 of 4 1.23Up
Larval fat body3963 4514 of 4 3.10Up
Larval trachea1822 184 of 4 1.44Up
Larval carcass1598 914 of 4 1.27Up
S2 cells (growing)1301 314 of 4 1.03None
Whole fly1262 254 of 4



/// scully (CG42368 /// scu):

Annotation Number : CG13981
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259714
Gbrowse : chr2L:6378839-6379308 (-) // 100.0 //
Probeset : 1623741_at
Accessions : protein= NP_001137799; /// NP_523396;, nucleotide= NM_001144327; /// NM_078672;
Pathway : 0005739 // mitochondrion // non-traceable author statement /// 0005739 // mitochondrion // inferred from electronic anno
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0003857 // 3-hydroxyacyl-CoA dehydrogenase acti
FlyMine data for FBgn0259714.
TRiP has 1 RNAi stocks for FBgn0259714 available for purchase.
VDRC has 3 RNAi stocks for FBgn0259714 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain44 14 of 4 6.80Up
Head22 24 of 4 3.50Up
Eye40 44 of 4 6.24Up
Thoracicoabdominal ganglion33 34 of 4 5.10Up
Salivary gland18 30 of 4 2.74Up
Crop4 00 of 4 0.70None
Midgut7 11 of 4 1.10None
Tubule3 00 of 4 0.60Down
Hindgut10 10 of 4 1.60None
Heart12 13 of 4 1.85Up
Fat body24 54 of 4 3.71Up
Ovary2 00 of 4 0.40None
Testis6 11 of 4 0.90None
Male accessory glands8 21 of 4 1.20None
Virgin spermatheca22 14 of 4 3.49Up
Mated spermatheca16 14 of 4 2.49Up
Adult carcass11 21 of 4 1.70None
Larval CNS16 24 of 4 2.50Up
Larval Salivary gland7 01 of 4 1.13None
Larval midgut6 00 of 4 0.93None
Larval tubule4 10 of 4 0.60None
Larval hindgut3 00 of 4 0.47None
Larval fat body135 64 of 420.70Up
Larval trachea4 10 of 4 0.72None
Larval carcass7 10 of 4 1.12None
S2 cells (growing)6 01 of 4 0.95None
Whole fly6 12 of 4

Looking for FBgn0021765. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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