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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0021768 through 18771 annotations produced 1 hits



nudC (nudC):

Annotation Number : CG9710
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0021768
Gbrowse : chr3L:16801521-16812638 (+) // 99.68 //
Probeset : 1629475_at
Accessions : protein= NP_648923;, nucleotide= NM_140666;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005875 // microtubule associated complex // inferred from direct
FlyMine data for FBgn0021768.
TRiP has 1 RNAi stocks for FBgn0021768 available for purchase.
VDRC has 1 RNAi stocks for FBgn0021768 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain92 ± 14 of 4 0.20Down
Head148 ± 94 of 4 0.40Down
Eye130 ± 94 of 4 0.33Down
Thoracicoabdominal ganglion109 ± 34 of 4 0.30Down
Salivary gland118 ± 54 of 4 0.30Down
Crop147 ± 94 of 4 0.40Down
Midgut191 ± 24 of 4 0.50Down
Tubule197 ± 184 of 4 0.50Down
Hindgut128 ± 54 of 4 0.30Down
Heart161 ± 64 of 4 0.41Down
Fat body202 ± 174 of 4 0.52Down
Ovary613 ± 94 of 4 1.60Up
Testis942 ± 264 of 4 2.40Up
Male accessory glands284 ± 214 of 4 0.70Down
Virgin spermatheca233 ± 114 of 4 0.59Down
Mated spermatheca255 ± 84 of 4 0.65Down
Adult carcass157 ± 24 of 4 0.40Down
Larval CNS468 ± 494 of 4 1.19Up
Larval Salivary gland303 ± 144 of 4 0.77Down
Larval midgut297 ± 184 of 4 0.76Down
Larval tubule593 ± 124 of 4 1.50Up
Larval hindgut268 ± 164 of 4 0.68Down
Larval fat body388 ± 614 of 4 1.00None
Larval trachea397 ± 614 of 4 1.01None
Larval carcass369 ± 234 of 4 0.94None
S2 cells (growing)291 ± 64 of 4 0.74Down
Whole fly393 ± 74 of 4

Looking for FBgn0021768. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime