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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0021847 through 18771 annotations produced 1 hits

lethal (2) k14710 (l(2)k14710):

Annotation Number : CG8325
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0021847
Gbrowse : chr2R:2097281-2101623 (-) // 100.0 //
Probeset : 1634331_at
Accessions : protein= NP_652063;, nucleotide= NM_143806;
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0021847.
BDGP gene expression has embryonic in situ data for l(2)k14710: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0021847 available for purchase.
VDRC has 1 RNAi stocks for FBgn0021847 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain438 164 of 4 3.10Up
Head210 54 of 4 1.50Up
Eye416 194 of 4 2.90Up
Thoracicoabdominal ganglion484 134 of 4 3.40Up
Salivary gland236 84 of 4 1.65Up
Crop193 84 of 4 1.40Up
Midgut154 44 of 4 1.10None
Tubule202 64 of 4 1.40Up
Hindgut197 34 of 4 1.40Up
Heart104 44 of 4 0.73Down
Fat body76 64 of 4 0.53Down
Ovary244 34 of 4 1.70Up
Testis101 54 of 4 0.70Down
Male accessory glands105 104 of 4 0.70Down
Virgin spermatheca149 24 of 4 1.04None
Mated spermatheca169 64 of 4 1.18Up
Adult carcass128 54 of 4 0.90None
Larval CNS169 64 of 4 1.18Up
Larval Salivary gland118 44 of 4 0.83Down
Larval midgut145 14 of 4 1.01None
Larval tubule178 44 of 4 1.20Up
Larval hindgut143 44 of 4 1.00None
Larval fat body90 74 of 4 0.60Down
Larval trachea119 54 of 4 0.83Down
Larval carcass106 24 of 4 0.74Down
S2 cells (growing)137 24 of 4 0.96None
Whole fly143 34 of 4

Looking for FBgn0021847. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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