FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0021856 through 18771 annotations produced 1 hits

lethal (2) k14505 (l(2)k14505):

Annotation Number : CG8674
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0021856
Gbrowse : chr2L:21261158-21262287 (+) // 100.0 //
Probeset : 1624331_at
Accessions : protein= NP_610102;, nucleotide= NM_136258;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0021856.
Homophila reports that CG8674 is a close match (4e-60) to human gene ATP12;ATPAF2 (NP_663729), a gene associated with Complex V, mitochondrial respiratory chain, deficiency of, 604273 (3).
VDRC has 1 RNAi stocks for FBgn0021856 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	261 ± 5	4 of 4	1.30	Up
Head	218 ± 3	4 of 4	1.10	None
Eye	213 ± 9	4 of 4	1.03	None
Thoracicoabdominal ganglion	294 ± 11	4 of 4	1.40	Up
Salivary gland	387 ± 24	4 of 4	1.87	Up
Crop	216 ± 9	4 of 4	1.00	None
Midgut	223 ± 15	4 of 4	1.10	None
Tubule	210 ± 1	4 of 4	1.00	None
Hindgut	295 ± 11	4 of 4	1.40	Up
Heart	206 ± 9	4 of 4	1.00	None
Fat body	231 ± 17	4 of 4	1.12	None
Ovary	314 ± 1	4 of 4	1.50	Up
Testis	157 ± 2	4 of 4	0.80	Down
Male accessory glands	173 ± 7	4 of 4	0.80	None
Virgin spermatheca	268 ± 9	4 of 4	1.30	Up
Mated spermatheca	272 ± 9	4 of 4	1.31	Up
Adult carcass	211 ± 9	4 of 4	1.00	None
Larval CNS	319 ± 12	4 of 4	1.54	Up
Larval Salivary gland	236 ± 9	4 of 4	1.14	None
Larval midgut	172 ± 7	4 of 4	0.83	None
Larval tubule	214 ± 10	4 of 4	1.00	None
Larval hindgut	250 ± 8	4 of 4	1.21	Up
Larval fat body	159 ± 12	4 of 4	0.80	Down
Larval trachea	238 ± 17	4 of 4	1.15	None
Larval carcass	215 ± 12	4 of 4	1.04	None
S2 cells (growing)	348 ± 3	4 of 4	1.68	Up
Whole fly	207 ± 11	4 of 4

Looking for FBgn0021856. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720