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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0021872 through 18771 annotations produced 1 hits



X box binding protein-1 (Xbp1):

Annotation Number : CG9415
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0021872
Gbrowse : chr2R:17031049-17033255 (+) // 100.0 //
Probeset : 1635355_a_at
Accessions : protein= NP_726032;, nucleotide= NM_166427;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007040 // lysosome organization // inferred from mutant pheno
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
FlyMine data for FBgn0021872.
BDGP gene expression has embryonic in situ data for Xbp1: 26 pix of staining in 25 body parts.
BioGrid reports that CG9415 interacts with CG9738 CG9761 .
TRiP has 2 RNAi stocks for FBgn0021872 available for purchase.
VDRC has 2 RNAi stocks for FBgn0021872 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain769 244 of 4 1.50Up
Head809 54 of 4 1.60Up
Eye504 284 of 4 1.02None
Thoracicoabdominal ganglion1019 434 of 4 2.10Up
Salivary gland2952 1204 of 4 5.94Up
Crop1786 194 of 4 3.60Up
Midgut1022 244 of 4 2.10Up
Tubule878 384 of 4 1.80Up
Hindgut1421 364 of 4 2.90Up
Heart1006 114 of 4 2.03Up
Fat body1464 494 of 4 2.95Up
Ovary274 14 of 4 0.60Down
Testis166 74 of 4 0.30Down
Male accessory glands2040 1224 of 4 4.10Up
Virgin spermatheca2100 1044 of 4 4.23Up
Mated spermatheca1937 964 of 4 3.90Up
Adult carcass1240 794 of 4 2.50Up
Larval CNS643 394 of 4 1.29Up
Larval Salivary gland2343 734 of 4 4.72Up
Larval midgut1181 724 of 4 2.38Up
Larval tubule968 54 of 4 1.90Up
Larval hindgut1170 304 of 4 2.35Up
Larval fat body1301 1264 of 4 2.60Up
Larval trachea401 784 of 4 0.81None
Larval carcass1176 484 of 4 2.37Up
S2 cells (growing)2079 144 of 4 4.18Up
Whole fly497 174 of 4

Looking for FBgn0021872. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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