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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0021906 through 18771 annotations produced 2 hits



Rieske iron-sulfur protein (RFeSP):

Annotation Number : CG7361
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0021906
Gbrowse : chr2L:1612685-1614182 (-) // 100.0 //
Probeset : 1641174_at
Accessions : protein= NP_524748; /// NP_722715;, nucleotide= NM_080009; /// NM_164426;
Pathway : ubiquinol to cytochrome c // inferred from sequence or structural similarity /// 0006810 // transport // inferred from
Interpro : 0005739 // mitochondrion // inferred from electronic annotation /// 0005750 // mitochondrial respiratory chain complex I
FlyMine data for FBgn0021906.
BDGP gene expression has embryonic in situ data for RFeSP: 16 pix of staining in 25 body parts.
BioGrid reports that CG7361 interacts with CG7809 CG9121 CG9930 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain90 24 of 4 0.40None
Head199 294 of 4 0.90None
Eye3 10 of 4 0.02Down
Thoracicoabdominal ganglion166 124 of 4 0.80None
Salivary gland136 154 of 4 0.64None
Crop249 104 of 4 1.20None
Midgut299 174 of 4 1.40None
Tubule173 254 of 4 0.80None
Hindgut304 154 of 4 1.40None
Heart13 22 of 4 0.06Down
Fat body28 363 of 4 0.13Down
Ovary236 84 of 4 1.10None
Testis52 44 of 4 0.20Down
Male accessory glands54 14 of 4 0.30Down
Virgin spermatheca281 474 of 4 1.31None
Mated spermatheca240 494 of 4 1.12None
Adult carcass645 374 of 4 3.00Up
Larval CNS4 12 of 4 0.02Down
Larval Salivary gland38 183 of 4 0.18Down
Larval midgut7 10 of 4 0.04Down
Larval tubule170 234 of 4 0.80None
Larval hindgut6 13 of 4 0.03Down
Larval fat body89 104 of 4 0.40None
Larval trachea14 112 of 4 0.07Down
Larval carcass4 00 of 4 0.02Down
S2 cells (growing)7 04 of 4 0.04Down
Whole fly214 434 of 4



Rieske iron-sulfur protein (RFeSP):

Annotation Number : CG7361
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0021906
Gbrowse : chr2L:1612685-1614182 (-) // 100.0 //
Probeset : 1631856_a_at
Accessions : protein= NP_524748; /// NP_722715;, nucleotide= NM_080009; /// NM_164426;
Pathway : ubiquinol to cytochrome c // inferred from sequence or structural similarity /// 0006810 // transport // inferred from
Interpro : 0005739 // mitochondrion // inferred from electronic annotation /// 0005750 // mitochondrial respiratory chain complex I
FlyMine data for FBgn0021906.
BDGP gene expression has embryonic in situ data for RFeSP: 16 pix of staining in 25 body parts.
BioGrid reports that CG7361 interacts with CG7809 CG9121 CG9930 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain995 254 of 4 1.00None
Head1134 434 of 4 1.10None
Eye1184 594 of 4 1.18Up
Thoracicoabdominal ganglion1407 314 of 4 1.40Up
Salivary gland1962 1024 of 4 1.96Up
Crop1045 464 of 4 1.00None
Midgut1243 544 of 4 1.20Up
Tubule864 234 of 4 0.90Down
Hindgut1698 374 of 4 1.70Up
Heart1227 494 of 4 1.22Up
Fat body1157 784 of 4 1.15Up
Ovary474 64 of 4 0.50Down
Testis416 204 of 4 0.40Down
Male accessory glands725 194 of 4 0.70Down
Virgin spermatheca1166 424 of 4 1.16Up
Mated spermatheca1081 404 of 4 1.08None
Adult carcass2788 704 of 4 2.80Up
Larval CNS454 174 of 4 0.45Down
Larval Salivary gland749 234 of 4 0.75Down
Larval midgut965 344 of 4 0.96None
Larval tubule740 784 of 4 0.70Down
Larval hindgut1178 504 of 4 1.18Up
Larval fat body382 234 of 4 0.40Down
Larval trachea377 294 of 4 0.38Down
Larval carcass1001 804 of 4 1.00None
S2 cells (growing)683 164 of 4 0.68Down
Whole fly1002 344 of 4

Looking for FBgn0021906. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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