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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0021953 through 18771 annotations produced 1 hits



Fatty acid (long chain) transport protein (Fatp):

Annotation Number : CG7400
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0021953
Gbrowse : chr2L:10511251-10517216 (-) // 100.0 //
Probeset : 1629869_s_at
Accessions : protein= NP_001162940; /// NP_524723; /// NP_723597;, nucleotide= NM_001169469; /// NM_079984; /// NM_164934;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005324 // long-chain fatty acid transporter ac
FlyMine data for FBgn0021953.
BDGP gene expression has embryonic in situ data for Fatp: 39 pix of staining in 11 body parts.
VDRC has 3 RNAi stocks for FBgn0021953 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain324 ± 104 of 4 0.90Down
Head797 ± 444 of 4 2.20Up
Eye1214 ± 284 of 4 3.27Up
Thoracicoabdominal ganglion494 ± 104 of 4 1.30Up
Salivary gland295 ± 34 of 4 0.80Down
Crop709 ± 284 of 4 1.90Up
Midgut953 ± 324 of 4 2.60Up
Tubule294 ± 114 of 4 0.80Down
Hindgut1486 ± 364 of 4 4.00Up
Heart1310 ± 694 of 4 3.53Up
Fat body1540 ± 1844 of 4 4.15Up
Ovary63 ± 44 of 4 0.20Down
Testis36 ± 34 of 4 0.10Down
Male accessory glands856 ± 94 of 4 2.30Up
Virgin spermatheca420 ± 124 of 4 1.13Up
Mated spermatheca426 ± 94 of 4 1.15Up
Adult carcass1272 ± 404 of 4 3.40Up
Larval CNS142 ± 74 of 4 0.38Down
Larval Salivary gland136 ± 34 of 4 0.37Down
Larval midgut799 ± 344 of 4 2.15Up
Larval tubule169 ± 74 of 4 0.50Down
Larval hindgut309 ± 314 of 4 0.83None
Larval fat body195 ± 214 of 4 0.50Down
Larval trachea149 ± 284 of 4 0.40Down
Larval carcass328 ± 304 of 4 0.89None
S2 cells (growing)296 ± 44 of 4 0.80Down
Whole fly370 ± 134 of 4

Looking for FBgn0021953. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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