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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0021967 through 18771 annotations produced 1 hits



chr2L:3466161-3467326 (+) // 100.0 // (Pdsw):

Annotation Number : CG8844
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1634249_s_at
Accessions : protein= , nucleotide= NP_651972; /// NP_722908;
Pathway : "0006120 // mitochondrial electron transport
Interpro : NADH to ubiquinone // inferred from sequence or structural similarity /// 0055114 // oxidation reduction // inferred fr
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain946 ± 164 of 4 1.00None
Head1339 ± 634 of 4 1.40Up
Eye1452 ± 514 of 4 1.50Up
Thoracicoabdominal ganglion1328 ± 474 of 4 1.40Up
Salivary gland1993 ± 694 of 4 2.06Up
Crop1311 ± 534 of 4 1.40Up
Midgut1177 ± 394 of 4 1.20Up
Tubule1171 ± 284 of 4 1.20Up
Hindgut2254 ± 674 of 4 2.30Up
Heart1518 ± 494 of 4 1.57Up
Fat body1816 ± 1454 of 4 1.88Up
Ovary548 ± 44 of 4 0.60Down
Testis459 ± 134 of 4 0.50Down
Male accessory glands985 ± 204 of 4 1.00None
Virgin spermatheca1777 ± 754 of 4 1.84Up
Mated spermatheca1592 ± 474 of 4 1.65Up
Adult carcass2399 ± 844 of 4 2.50Up
Larval CNS665 ± 494 of 4 0.69Down
Larval Salivary gland1135 ± 254 of 4 1.17Up
Larval midgut879 ± 444 of 4 0.91None
Larval tubule766 ± 664 of 4 0.80None
Larval hindgut1507 ± 944 of 4 1.56Up
Larval fat body396 ± 164 of 4 0.40Down
Larval trachea754 ± 254 of 4 0.78Down
Larval carcass1026 ± 744 of 4 1.06None
S2 cells (growing)504 ± 74 of 4 0.52Down
Whole fly967 ± 524 of 4

Looking for FBgn0021967. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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