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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0022069 through 18771 annotations produced 1 hits



Nnp-1 (Nnp-1):

Annotation Number : CG12396
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0022069
Gbrowse : chr2L:13363299-13366188 (-) // 100.0 //
Probeset : 1639509_at
Accessions : protein= NP_651976;, nucleotide= NM_143719;
Pathway : "0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // non-traceable author st
Interpro : small subunit precursor // inferred from electronic annotation"
FlyMine data for FBgn0022069.
BioGrid reports that CG12396 interacts with CG12620 CG6380 .
VDRC has 3 RNAi stocks for FBgn0022069 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain232 94 of 4 0.50Down
Head171 54 of 4 0.40Down
Eye120 34 of 4 0.27Down
Thoracicoabdominal ganglion284 94 of 4 0.60Down
Salivary gland123 74 of 4 0.28Down
Crop176 44 of 4 0.40Down
Midgut134 34 of 4 0.30Down
Tubule179 284 of 4 0.40Down
Hindgut109 24 of 4 0.20Down
Heart134 114 of 4 0.30Down
Fat body324 404 of 4 0.73Down
Ovary922 134 of 4 2.10Up
Testis239 164 of 4 0.50Down
Male accessory glands333 124 of 4 0.70Down
Virgin spermatheca230 154 of 4 0.52Down
Mated spermatheca384 34 of 4 0.86Down
Adult carcass135 94 of 4 0.30Down
Larval CNS772 364 of 4 1.73Up
Larval Salivary gland457 474 of 4 1.02None
Larval midgut202 234 of 4 0.45Down
Larval tubule68 34 of 4 0.20Down
Larval hindgut349 514 of 4 0.78None
Larval fat body101 124 of 4 0.20Down
Larval trachea414 594 of 4 0.93None
Larval carcass518 1244 of 4 1.16None
S2 cells (growing)462 74 of 4 1.04None
Whole fly446 184 of 4

Looking for FBgn0022069. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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