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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0022097 through 18771 annotations produced 1 hits

Vacuolar H-ATPase subunit D (Vha36-1):

Annotation Number : CG8186
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0022097
Gbrowse : chr2R:11428921-11430003 (+) // 100.0 //
Probeset : 1624086_at
Accessions : protein= NP_651987;, nucleotide= NM_143730;
Pathway : "0000221 // vacuolar proton-transporting V-type ATPase
Interpro : V1 domain // inferred from sequence or structural similarity /// 0000221 // vacuolar proton-transporting V-type ATPase
FlyMine data for FBgn0022097.
BDGP gene expression has embryonic in situ data for Vha36: 14 pix of staining in 11 body parts.
BioGrid reports that CG8186 interacts with CG8841 .
VDRC has 2 RNAi stocks for FBgn0022097 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1008 424 of 4 1.20None
Head903 344 of 4 1.10None
Eye1006 204 of 4 1.17Up
Thoracicoabdominal ganglion1297 454 of 4 1.50Up
Salivary gland6927 3774 of 4 8.06Up
Crop1044 294 of 4 1.20Up
Midgut2245 364 of 4 2.60Up
Tubule3336 694 of 4 3.90Up
Hindgut3089 424 of 4 3.60Up
Heart891 164 of 4 1.04None
Fat body450 184 of 4 0.52Down
Ovary705 94 of 4 0.80Down
Testis170 54 of 4 0.20Down
Male accessory glands747 234 of 4 0.90None
Virgin spermatheca626 284 of 4 0.73Down
Mated spermatheca703 414 of 4 0.82None
Adult carcass722 164 of 4 0.80None
Larval CNS706 344 of 4 0.82Down
Larval Salivary gland1937 974 of 4 2.25Up
Larval midgut2287 824 of 4 2.66Up
Larval tubule2417 404 of 4 2.80Up
Larval hindgut3154 384 of 4 3.67Up
Larval fat body580 584 of 4 0.70Down
Larval trachea1377 544 of 4 1.60Up
Larval carcass870 234 of 4 1.01None
S2 cells (growing)860 294 of 4 1.00None
Whole fly859 484 of 4

Looking for FBgn0022097. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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