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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0022246 through 18771 annotations produced 1 hits



RNaseP protein p30 (Rpp30):

Annotation Number : CG11606
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0022246
Gbrowse : chr2L:251162-252331 (-) // 100.0 //
Probeset : 1634798_at
Accessions : protein= NP_524749;, nucleotide= NM_080010;
Pathway : 0030677 // ribonuclease P complex // inferred from sequence or structural similarity
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004540 // ribonuclease activity // inferred fr
FlyMine data for FBgn0022246.
BDGP gene expression has embryonic in situ data for Rpp30: 4 pix of staining in 1 body parts.
BioGrid reports that CG11606 interacts with CG1975 .
VDRC has 2 RNAi stocks for FBgn0022246 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain48 ± 44 of 4 0.70Down
Head46 ± 54 of 4 0.60Down
Eye50 ± 24 of 4 0.70Down
Thoracicoabdominal ganglion50 ± 34 of 4 0.70Down
Salivary gland52 ± 44 of 4 0.72Down
Crop67 ± 14 of 4 0.90None
Midgut51 ± 30 of 4 0.70Down
Tubule51 ± 44 of 4 0.70Down
Hindgut45 ± 14 of 4 0.60Down
Heart52 ± 24 of 4 0.72Down
Fat body68 ± 54 of 4 0.95None
Ovary119 ± 44 of 4 1.60Up
Testis13 ± 00 of 4 0.20Down
Male accessory glands128 ± 94 of 4 1.80Up
Virgin spermatheca114 ± 24 of 4 1.58Up
Mated spermatheca123 ± 14 of 4 1.71Up
Adult carcass45 ± 24 of 4 0.60Down
Larval CNS158 ± 94 of 4 2.20Up
Larval Salivary gland93 ± 54 of 4 1.29Up
Larval midgut53 ± 20 of 4 0.73Down
Larval tubule73 ± 44 of 4 1.00None
Larval hindgut70 ± 14 of 4 0.97None
Larval fat body58 ± 74 of 4 0.80None
Larval trachea136 ± 184 of 4 1.89Up
Larval carcass76 ± 34 of 4 1.06None
S2 cells (growing)192 ± 34 of 4 2.66Up
Whole fly72 ± 44 of 4

Looking for FBgn0022246. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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