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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0022288 through 18771 annotations produced 1 hits

lethal (2) 09851 (l(2)09851):

Annotation Number : CG12792
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0022288
Gbrowse : chr2R:1642032-1643558 (+) // 100.0 //
Probeset : 1639392_at
Accessions : protein= NP_610182;, nucleotide= NM_136338;
FlyMine data for FBgn0022288.
BDGP gene expression has embryonic in situ data for l(2)09851: 10 pix of staining in 19 body parts.
Homophila reports that CG12792 is a close match (2e-16) to human gene PEX7;RCDP1 (NP_000279), a gene associated with Refsum disease, 266500 (3);Rhizomelic chondrodysplasia punctata, type 1, 215100 (3).
VDRC has 2 RNAi stocks for FBgn0022288 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain83 44 of 4 0.30Down
Head109 34 of 4 0.30Down
Eye88 34 of 4 0.27Down
Thoracicoabdominal ganglion72 24 of 4 0.20Down
Salivary gland120 134 of 4 0.37Down
Crop142 54 of 4 0.40Down
Midgut197 124 of 4 0.60Down
Tubule145 224 of 4 0.50Down
Hindgut146 74 of 4 0.50Down
Heart124 84 of 4 0.39Down
Fat body185 264 of 4 0.58Down
Ovary602 114 of 4 1.90Up
Testis149 64 of 4 0.50Down
Male accessory glands188 124 of 4 0.60Down
Virgin spermatheca119 104 of 4 0.37Down
Mated spermatheca155 84 of 4 0.48Down
Adult carcass111 74 of 4 0.30Down
Larval CNS383 234 of 4 1.19None
Larval Salivary gland211 174 of 4 0.65Down
Larval midgut117 84 of 4 0.37Down
Larval tubule87 44 of 4 0.30Down
Larval hindgut177 224 of 4 0.55Down
Larval fat body86 94 of 4 0.30Down
Larval trachea280 534 of 4 0.87None
Larval carcass271 584 of 4 0.84None
S2 cells (growing)827 94 of 4 2.57Up
Whole fly322 324 of 4

Looking for FBgn0022288. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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