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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0022344 through 18771 annotations produced 1 hits



anon-fast-evolving-2A5 (CG10340):

Annotation Number : CG10340
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0022344
Gbrowse : chr3R:12439133-12440109 (-) // 100.0 //
Probeset : 1637678_at
Accessions : protein= NP_650565;, nucleotide= NM_142308;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0022344.
BioGrid reports that CG10340 interacts with CG11154 CG17230 CG1848 .
VDRC has 2 RNAi stocks for FBgn0022344 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain640 ± 214 of 4 1.40Up
Head498 ± 54 of 4 1.10None
Eye400 ± 154 of 4 0.87None
Thoracicoabdominal ganglion784 ± 234 of 4 1.70Up
Salivary gland438 ± 104 of 4 0.95None
Crop445 ± 154 of 4 1.00None
Midgut449 ± 134 of 4 1.00None
Tubule352 ± 174 of 4 0.80Down
Hindgut696 ± 144 of 4 1.50Up
Heart507 ± 104 of 4 1.10None
Fat body518 ± 374 of 4 1.13None
Ovary499 ± 74 of 4 1.10None
Testis372 ± 144 of 4 0.80Down
Male accessory glands333 ± 104 of 4 0.70Down
Virgin spermatheca428 ± 244 of 4 0.93None
Mated spermatheca396 ± 104 of 4 0.86None
Adult carcass664 ± 464 of 4 1.40Up
Larval CNS508 ± 144 of 4 1.10None
Larval Salivary gland262 ± 164 of 4 0.57Down
Larval midgut276 ± 154 of 4 0.60Down
Larval tubule287 ± 34 of 4 0.60Down
Larval hindgut507 ± 254 of 4 1.10None
Larval fat body241 ± 124 of 4 0.50Down
Larval trachea466 ± 514 of 4 1.01None
Larval carcass434 ± 564 of 4 0.94None
S2 cells (growing)322 ± 44 of 4 0.70Down
Whole fly460 ± 224 of 4

Looking for FBgn0022344. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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