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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0022355 through 18771 annotations produced 3 hits



Transferrin 1 (Tsf1):

Annotation Number : CG6186
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0022355
Gbrowse : chrX:18281954-18282635 (+) // 100.0 //
Probeset : 1639442_a_at
Accessions : protein= NP_523401;, nucleotide= NM_078677;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0005381 // iron ion transmembrane transporter activity // inferred from sequence or structural similarity /// 0005381 //
FlyMine data for FBgn0022355.
Homophila reports that CG6186 is a close match (4e-22) to human gene TF (NP_001054), a gene associated with Atransferrinemia, 209300 (3);{Iron deficiency anemia, susceptibility to} (3).
VDRC has 2 RNAi stocks for FBgn0022355 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain595 114 of 4 3.90Up
Head1015 694 of 4 6.60Up
Eye287 304 of 4 1.86None
Thoracicoabdominal ganglion477 204 of 4 3.10Up
Salivary gland70 54 of 4 0.46None
Crop30 52 of 4 0.20None
Midgut20 41 of 4 0.10None
Tubule20 11 of 4 0.10Down
Hindgut117 214 of 4 0.80None
Heart310 974 of 4 2.01None
Fat body428 1484 of 4 2.78Up
Ovary9 10 of 4 0.10Down
Testis58 54 of 4 0.40None
Male accessory glands6 20 of 4 0.00Down
Virgin spermatheca71 84 of 4 0.46None
Mated spermatheca35 63 of 4 0.23None
Adult carcass772 784 of 4 5.00Up
Larval CNS58 164 of 4 0.38None
Larval Salivary gland24 22 of 4 0.16None
Larval midgut14 20 of 4 0.09None
Larval tubule6 10 of 4 0.00Down
Larval hindgut87 54 of 4 0.56None
Larval fat body263 454 of 4 1.70None
Larval trachea1876 3474 of 412.16Up
Larval carcass114 154 of 4 0.74None
S2 cells (growing)38 44 of 4 0.25None
Whole fly154 444 of 4



Transferrin 1 (Tsf1):

Annotation Number : CG6186
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0022355
Gbrowse : chrX:18281954-18282635 (+) // 100.0 //
Probeset : 1640934_at
Accessions : protein= NP_523401;, nucleotide= NM_078677;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0005381 // iron ion transmembrane transporter activity // inferred from sequence or structural similarity /// 0005381 //
FlyMine data for FBgn0022355.
Homophila reports that CG6186 is a close match (4e-22) to human gene TF (NP_001054), a gene associated with Atransferrinemia, 209300 (3);{Iron deficiency anemia, susceptibility to} (3).
VDRC has 2 RNAi stocks for FBgn0022355 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 11 of 4 5.50Up
Head5 11 of 4 4.80Up
Eye4 01 of 4 3.91Up
Thoracicoabdominal ganglion3 10 of 4 2.80None
Salivary gland5 10 of 4 4.89Up
Crop3 10 of 4 2.90None
Midgut4 10 of 4 3.60None
Tubule5 00 of 4 5.00Up
Hindgut2 10 of 4 2.60None
Heart2 00 of 4 2.66None
Fat body4 32 of 4 3.77None
Ovary2 01 of 4 1.90None
Testis1 00 of 4 1.30None
Male accessory glands3 00 of 4 3.00None
Virgin spermatheca1 00 of 4 1.16None
Mated spermatheca3 10 of 4 2.95None
Adult carcass6 31 of 4 6.10None
Larval CNS1 10 of 4 1.61None
Larval Salivary gland1 00 of 4 1.20None
Larval midgut2 11 of 4 2.52None
Larval tubule1 00 of 4 1.30None
Larval hindgut3 00 of 4 2.86None
Larval fat body2 00 of 4 2.40None
Larval trachea11 14 of 410.05Up
Larval carcass2 00 of 4 2.55None
S2 cells (growing)1 00 of 4 1.39None
Whole fly1 00 of 4



Transferrin 1 (Tsf1):

Annotation Number : CG6186
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0022355
Gbrowse : chrX:18281964-18284377 (+) // 100.0 //
Probeset : 1632430_at
Accessions : protein= NP_523401;, nucleotide= NM_078677;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0005381 // iron ion transmembrane transporter activity // inferred from sequence or structural similarity /// 0005381 //
FlyMine data for FBgn0022355.
Homophila reports that CG6186 is a close match (4e-22) to human gene TF (NP_001054), a gene associated with Atransferrinemia, 209300 (3);{Iron deficiency anemia, susceptibility to} (3).
VDRC has 2 RNAi stocks for FBgn0022355 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1887 274 of 4 2.20Up
Head2996 2474 of 4 3.50Up
Eye2556 2454 of 4 3.03Up
Thoracicoabdominal ganglion3001 844 of 4 3.60Up
Salivary gland352 344 of 4 0.42Down
Crop155 284 of 4 0.20Down
Midgut111 224 of 4 0.10Down
Tubule179 334 of 4 0.20Down
Hindgut468 414 of 4 0.60Down
Heart2156 3624 of 4 2.55Up
Fat body2676 1664 of 4 3.17Up
Ovary36 64 of 4 0.00Down
Testis370 264 of 4 0.40Down
Male accessory glands43 64 of 4 0.10Down
Virgin spermatheca3155 1234 of 4 3.74Up
Mated spermatheca1630 3754 of 4 1.93None
Adult carcass3389 1834 of 4 4.00Up
Larval CNS364 654 of 4 0.43Down
Larval Salivary gland207 124 of 4 0.25Down
Larval midgut116 34 of 4 0.14Down
Larval tubule11 10 of 4 0.00Down
Larval hindgut722 284 of 4 0.86None
Larval fat body1059 1824 of 4 1.30None
Larval trachea5074 1774 of 4 6.01Up
Larval carcass832 1404 of 4 0.99None
S2 cells (growing)69 74 of 4 0.08Down
Whole fly844 954 of 4

Looking for FBgn0022355. 3 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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