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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0022708 through 18771 annotations produced 1 hits



Adenylate kinase-2 (Adk2):

Annotation Number : CG3140
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0022708
Gbrowse : chr2R:19911720-19913400 (+) // 100.0 //
Probeset : 1637064_at
Accessions : protein= NP_523836;, nucleotide= NM_079112;
Pathway : nucleoside
Interpro : nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0006172 // ADP biosynthetic pr
FlyMine data for FBgn0022708.
BDGP gene expression has embryonic in situ data for Adk2: 18 pix of staining in 16 body parts.
Homophila reports that CG3140 is a close match (8e-26) to human gene AK1 (NP_000467), a gene associated with Hemolytic anemia due to adenylate kinase deficiency (3).
BioGrid reports that CG3140 interacts with CG5792 Dmel CG9006 CG5383 CG6156 .
TRiP has 1 RNAi stocks for FBgn0022708 available for purchase.
VDRC has 2 RNAi stocks for FBgn0022708 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain803 ± 264 of 4 0.90Down
Head762 ± 184 of 4 0.80Down
Eye539 ± 324 of 4 0.58Down
Thoracicoabdominal ganglion628 ± 84 of 4 0.70Down
Salivary gland1103 ± 564 of 4 1.19Up
Crop1132 ± 424 of 4 1.20Up
Midgut1614 ± 494 of 4 1.70Up
Tubule1039 ± 664 of 4 1.10None
Hindgut1009 ± 44 of 4 1.10Up
Heart1218 ± 414 of 4 1.32Up
Fat body1550 ± 1194 of 4 1.68Up
Ovary1236 ± 214 of 4 1.30Up
Testis177 ± 74 of 4 0.20Down
Male accessory glands941 ± 384 of 4 1.00None
Virgin spermatheca1559 ± 744 of 4 1.69Up
Mated spermatheca1401 ± 514 of 4 1.52Up
Adult carcass906 ± 234 of 4 1.00None
Larval CNS1023 ± 1084 of 4 1.11None
Larval Salivary gland1131 ± 744 of 4 1.22None
Larval midgut1687 ± 744 of 4 1.83Up
Larval tubule397 ± 214 of 4 0.40Down
Larval hindgut1541 ± 814 of 4 1.67Up
Larval fat body653 ± 744 of 4 0.70Down
Larval trachea1746 ± 624 of 4 1.89Up
Larval carcass1090 ± 1264 of 4 1.18None
S2 cells (growing)1137 ± 214 of 4 1.23Up
Whole fly923 ± 244 of 4

Looking for FBgn0022708. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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