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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0022770 through 18771 annotations produced 1 hits



peritrophin A (Peritrophin-A):

Annotation Number : CG17058
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0022770
Gbrowse : chrX:20115726-20119273 (+) // 100.0 //
Probeset : 1630085_s_at
Accessions : protein= NP_523418; /// NP_728324;, nucleotide= NM_078694; /// NM_167694;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation /// 0008061 // chitin binding // non-traceable author s
FlyMine data for FBgn0022770.
VDRC has 3 RNAi stocks for FBgn0022770 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.20None
Head19 ± 10 of 4 1.80None
Eye16 ± 40 of 4 1.53None
Thoracicoabdominal ganglion3 ± 10 of 4 0.30None
Salivary gland3 ± 00 of 4 0.36None
Crop8 ± 20 of 4 0.80None
Midgut17 ± 20 of 4 1.60None
Tubule22 ± 71 of 4 2.00None
Hindgut6 ± 00 of 4 0.60None
Heart7 ± 11 of 4 0.71None
Fat body10 ± 50 of 4 0.98None
Ovary7 ± 00 of 4 0.70None
Testis2 ± 10 of 4 0.20None
Male accessory glands105 ± 254 of 4 9.70Up
Virgin spermatheca5 ± 20 of 4 0.52None
Mated spermatheca5 ± 20 of 4 0.51None
Adult carcass30 ± 32 of 4 2.80Up
Larval CNS10 ± 10 of 4 0.96None
Larval Salivary gland13 ± 20 of 4 1.21None
Larval midgut26 ± 00 of 4 2.46Up
Larval tubule12 ± 10 of 4 1.10None
Larval hindgut91 ± 114 of 4 8.39Up
Larval fat body36 ± 43 of 4 3.40Up
Larval trachea1026 ± 534 of 494.57Up
Larval carcass1629 ± 1584 of 4150.18Up
S2 cells (growing)4 ± 10 of 4 0.41None
Whole fly10 ± 30 of 4

Looking for FBgn0022770. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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