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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0022786 through 18771 annotations produced 1 hits

Drosophila homolog of HIRA (Hira):

Annotation Number : CG12153
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0022786
Gbrowse : chrX:7616166-7619942 (+) // 100.0 //
Probeset : 1640173_at
Accessions : protein= NP_572401;, nucleotide= NM_132173;
Pathway : DNA-dependent // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic
Interpro : exchange of chromosomal proteins // inferred from mutant phenotype /// 0045449 // regulation of transcription // inferr
FlyMine data for FBgn0022786.
Homophila reports that CG12153 is a close match (3e-12) to human gene LIS1;PAFAH1B1 (NP_000421), a gene associated with Lissencephaly-1, 607432 (3);Subcortical laminar heterotopia (3).
TRiP has 1 RNAi stocks for FBgn0022786 available for purchase.
VDRC has 3 RNAi stocks for FBgn0022786 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain63 24 of 4 0.60Down
Head37 14 of 4 0.30Down
Eye22 14 of 4 0.21Down
Thoracicoabdominal ganglion51 24 of 4 0.50Down
Salivary gland55 23 of 4 0.52Down
Crop51 44 of 4 0.50Down
Midgut86 44 of 4 0.80Down
Tubule200 44 of 4 1.90Up
Hindgut49 24 of 4 0.50Down
Heart24 14 of 4 0.23Down
Fat body51 64 of 4 0.48Down
Ovary243 84 of 4 2.30Up
Testis65 54 of 4 0.60Down
Male accessory glands73 44 of 4 0.70Down
Virgin spermatheca72 64 of 4 0.67Down
Mated spermatheca66 54 of 4 0.62Down
Adult carcass45 54 of 4 0.40Down
Larval CNS145 84 of 4 1.36Up
Larval Salivary gland101 44 of 4 0.94None
Larval midgut83 24 of 4 0.78Down
Larval tubule110 44 of 4 1.00None
Larval hindgut70 14 of 4 0.66Down
Larval fat body76 24 of 4 0.70Down
Larval trachea61 24 of 4 0.57Down
Larval carcass74 14 of 4 0.69Down
S2 cells (growing)118 44 of 4 1.11None
Whole fly106 54 of 4

Looking for FBgn0022786. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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