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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0022981 through 18771 annotations produced 1 hits



ripped pocket (rpk):

Annotation Number : CG1058
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0022981
Gbrowse : chr3R:471652-474614 (+) // 100.0 //
Probeset : 1627830_at
Accessions : protein= NP_524225;, nucleotide= NM_079501;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005216 // ion channel activity // inferred from electronic annotation /// 0005272 // sodium channel activity // inferre
FlyMine data for FBgn0022981.
TRiP has 2 RNAi stocks for FBgn0022981 available for purchase.
VDRC has 2 RNAi stocks for FBgn0022981 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head0 00 of 4 0.00Down
Eye0 00 of 4 0.00Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland11 61 of 4 0.03Down
Crop1 00 of 4 0.00Down
Midgut1 00 of 4 0.00Down
Tubule8 70 of 4 0.00Down
Hindgut0 00 of 4 0.00Down
Heart1 00 of 4 0.00Down
Fat body7 71 of 4 0.02Down
Ovary904 104 of 4 2.50Up
Testis47 14 of 4 0.10Down
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca10 10 of 4 0.03Down
Mated spermatheca2 00 of 4 0.01Down
Adult carcass15 62 of 4 0.00Down
Larval CNS29 54 of 4 0.08Down
Larval Salivary gland0 00 of 4 0.00Down
Larval midgut0 00 of 4 0.00Down
Larval tubule0 00 of 4 0.00Down
Larval hindgut0 00 of 4 0.00Down
Larval fat body11 21 of 4 0.00Down
Larval trachea1 00 of 4 0.00Down
Larval carcass1 00 of 4 0.00Down
S2 cells (growing)0 00 of 4 0.00Down
Whole fly359 184 of 4

Looking for FBgn0022981. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime