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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0022986 through 18771 annotations produced 1 hits



KH-domain (qkr58E-1):

Annotation Number : CG3613
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0022986
Gbrowse : chr2R:18300412-18303047 (-) // 100.0 //
Probeset : 1631768_at
Accessions : protein= NP_523809;, nucleotide= NM_079085;
Pathway : via spliceosome // inferred by curator"
Interpro : 0071011 // precatalytic spliceosome // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferre
FlyMine data for FBgn0022986.
BDGP gene expression has embryonic in situ data for qkr58E-1: 4 pix of staining in 1 body parts.
BioGrid reports that CG3613 interacts with CG3613 CG6673 CG7524 CG9075 .
TRiP has 1 RNAi stocks for FBgn0022986 available for purchase.
VDRC has 2 RNAi stocks for FBgn0022986 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain139 ± 74 of 4 1.60Up
Head46 ± 54 of 4 0.50Down
Eye44 ± 24 of 4 0.53Down
Thoracicoabdominal ganglion70 ± 64 of 4 0.80None
Salivary gland94 ± 84 of 4 1.11None
Crop43 ± 24 of 4 0.50Down
Midgut49 ± 24 of 4 0.60Down
Tubule35 ± 23 of 4 0.40Down
Hindgut45 ± 44 of 4 0.50Down
Heart41 ± 14 of 4 0.49Down
Fat body59 ± 64 of 4 0.70Down
Ovary155 ± 84 of 4 1.80Up
Testis24 ± 34 of 4 0.30Down
Male accessory glands324 ± 124 of 4 3.80Up
Virgin spermatheca51 ± 04 of 4 0.61Down
Mated spermatheca52 ± 64 of 4 0.62Down
Adult carcass30 ± 34 of 4 0.40Down
Larval CNS224 ± 224 of 4 2.63Up
Larval Salivary gland116 ± 34 of 4 1.37Up
Larval midgut29 ± 10 of 4 0.35Down
Larval tubule75 ± 34 of 4 0.90None
Larval hindgut55 ± 24 of 4 0.66Down
Larval fat body61 ± 34 of 4 0.70Down
Larval trachea128 ± 194 of 4 1.51Up
Larval carcass47 ± 64 of 4 0.55Down
S2 cells (growing)179 ± 94 of 4 2.11Up
Whole fly85 ± 74 of 4

Looking for FBgn0022986. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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