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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0023000 through 18771 annotations produced 1 hits



methuselah (mth):

Annotation Number : CG6936
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023000
Gbrowse : chr3L:343375-346909 (-) // 100.0 //
Probeset : 1632989_a_at
Accessions : protein= NP_001163311; /// NP_001163312; /// NP_523871; /// NP_728521;, nucleotide= NM_001169840; /// NM_001169841; /// NM_079147; /// NM_167829;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0023000.
TRiP has 2 RNAi stocks for FBgn0023000 available for purchase.
VDRC has 1 RNAi stocks for FBgn0023000 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 ± 14 of 4 0.30Down
Head49 ± 44 of 4 0.80None
Eye50 ± 34 of 4 0.83None
Thoracicoabdominal ganglion21 ± 14 of 4 0.40Down
Salivary gland25 ± 43 of 4 0.42Down
Crop131 ± 94 of 4 2.20Up
Midgut49 ± 34 of 4 0.80None
Tubule144 ± 54 of 4 2.40Up
Hindgut82 ± 34 of 4 1.40Up
Heart221 ± 54 of 4 3.66Up
Fat body60 ± 94 of 4 1.00None
Ovary76 ± 14 of 4 1.30Up
Testis19 ± 04 of 4 0.30Down
Male accessory glands69 ± 104 of 4 1.10None
Virgin spermatheca85 ± 34 of 4 1.41Up
Mated spermatheca117 ± 94 of 4 1.94Up
Adult carcass59 ± 34 of 4 1.00None
Larval CNS92 ± 64 of 4 1.52Up
Larval Salivary gland295 ± 264 of 4 4.88Up
Larval midgut106 ± 34 of 4 1.75Up
Larval tubule423 ± 194 of 4 7.00Up
Larval hindgut96 ± 54 of 4 1.59Up
Larval fat body240 ± 184 of 4 4.00Up
Larval trachea334 ± 324 of 4 5.53Up
Larval carcass191 ± 174 of 4 3.17Up
S2 cells (growing)257 ± 24 of 4 4.26Up
Whole fly60 ± 34 of 4

Looking for FBgn0023000. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime