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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0023023 through 18771 annotations produced 5 hits



dihydropyrimidine amidohydrolase (CRMP):

Annotation Number : CG1411
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023023
Gbrowse : chr3R:1396829-1402463 (+) // 100.0 //
Probeset : 1634864_at
Accessions : protein= NP_477307; /// NP_730952; /// NP_730953; /// NP_730954;, nucleotide= NM_057959; /// NM_169070; /// NM_169071; /// NM_169072;
Interpro : "0004157 // dihydropyrimidinase activity // inferred from sequence or structural similarity /// 0004157 // dihydropyrimi
FlyMine data for FBgn0023023.
BDGP gene expression has embryonic in situ data for CRMP: 21 pix of staining in 7 body parts.
Homophila reports that CG1411 is a close match (3e-34) to human gene DHP;DPYS (NP_001376), a gene associated with Dihydropyrimidinuria (3).
TRiP has 1 RNAi stocks for FBgn0023023 available for purchase.
VDRC has 2 RNAi stocks for FBgn0023023 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 03 of 4 2.50Up
Head4 ± 00 of 4 1.50None
Eye4 ± 00 of 4 1.51None
Thoracicoabdominal ganglion9 ± 13 of 4 3.10Up
Salivary gland8 ± 30 of 4 2.93None
Crop5 ± 10 of 4 1.80None
Midgut4 ± 10 of 4 1.60None
Tubule3 ± 00 of 4 1.00None
Hindgut5 ± 12 of 4 1.70None
Heart3 ± 11 of 4 1.19None
Fat body5 ± 10 of 4 1.77None
Ovary2 ± 10 of 4 0.80None
Testis2 ± 00 of 4 0.70None
Male accessory glands2 ± 10 of 4 1.00None
Virgin spermatheca4 ± 10 of 4 1.43None
Mated spermatheca2 ± 10 of 4 0.96None
Adult carcass5 ± 10 of 4 1.70None
Larval CNS3 ± 12 of 4 1.21None
Larval Salivary gland4 ± 11 of 4 1.53None
Larval midgut4 ± 12 of 4 1.57None
Larval tubule3 ± 00 of 4 1.00None
Larval hindgut3 ± 10 of 4 1.21None
Larval fat body17 ± 34 of 4 5.80Up
Larval trachea1 ± 10 of 4 0.61None
Larval carcass1 ± 00 of 4 0.36None
S2 cells (growing)9 ± 04 of 4 3.07Up
Whole fly3 ± 11 of 4



dihydropyrimidine amidohydrolase (CRMP):

Annotation Number : CG1411
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023023
Gbrowse : chr3R:1396829-1401063 (+) // 100.0 //
Probeset : 1635381_a_at
Accessions : protein= NP_477307; /// NP_730952; /// NP_730953; /// NP_730954;, nucleotide= NM_057959; /// NM_169070; /// NM_169071; /// NM_169072;
Interpro : "0004157 // dihydropyrimidinase activity // inferred from sequence or structural similarity /// 0004157 // dihydropyrimi
FlyMine data for FBgn0023023.
BDGP gene expression has embryonic in situ data for CRMP: 21 pix of staining in 7 body parts.
Homophila reports that CG1411 is a close match (3e-34) to human gene DHP;DPYS (NP_001376), a gene associated with Dihydropyrimidinuria (3).
TRiP has 1 RNAi stocks for FBgn0023023 available for purchase.
VDRC has 2 RNAi stocks for FBgn0023023 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain94 ± 54 of 4 9.00Up
Head39 ± 84 of 4 3.80Up
Eye8 ± 20 of 4 0.78None
Thoracicoabdominal ganglion37 ± 74 of 4 3.60Up
Salivary gland23 ± 73 of 4 2.24None
Crop40 ± 74 of 4 3.90Up
Midgut2 ± 10 of 4 0.20Down
Tubule1 ± 00 of 4 0.10Down
Hindgut41 ± 14 of 4 3.90Up
Heart5 ± 10 of 4 0.48Down
Fat body22 ± 131 of 4 2.18None
Ovary3 ± 00 of 4 0.30Down
Testis2 ± 00 of 4 0.20Down
Male accessory glands6 ± 10 of 4 0.60None
Virgin spermatheca1 ± 00 of 4 0.18Down
Mated spermatheca5 ± 10 of 4 0.52Down
Adult carcass26 ± 22 of 4 2.50Up
Larval CNS39 ± 24 of 4 3.78Up
Larval Salivary gland3 ± 10 of 4 0.32Down
Larval midgut1 ± 00 of 4 0.10Down
Larval tubule0 ± 00 of 4 0.10Down
Larval hindgut4 ± 11 of 4 0.46Down
Larval fat body34 ± 64 of 4 3.30Up
Larval trachea0 ± 00 of 4 0.07Down
Larval carcass17 ± 43 of 4 1.65None
S2 cells (growing)20 ± 14 of 4 1.99Up
Whole fly10 ± 00 of 4



dihydropyrimidine amidohydrolase (CRMP):

Annotation Number : CG1411
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023023
Gbrowse : chr3R:1396829-1402463 (+) // 100.0 //
Probeset : 1636534_a_at
Accessions : protein= NP_477307; /// NP_730952; /// NP_730953; /// NP_730954;, nucleotide= NM_057959; /// NM_169070; /// NM_169071; /// NM_169072;
Interpro : "0004157 // dihydropyrimidinase activity // inferred from sequence or structural similarity /// 0004157 // dihydropyrimi
FlyMine data for FBgn0023023.
BDGP gene expression has embryonic in situ data for CRMP: 21 pix of staining in 7 body parts.
Homophila reports that CG1411 is a close match (3e-34) to human gene DHP;DPYS (NP_001376), a gene associated with Dihydropyrimidinuria (3).
TRiP has 1 RNAi stocks for FBgn0023023 available for purchase.
VDRC has 2 RNAi stocks for FBgn0023023 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 ± 00 of 4 2.00None
Head19 ± 21 of 4 3.50Up
Eye3 ± 10 of 4 0.56None
Thoracicoabdominal ganglion5 ± 10 of 4 1.00None
Salivary gland32 ± 51 of 4 5.74Up
Crop25 ± 33 of 4 4.50Up
Midgut3 ± 10 of 4 0.60None
Tubule2 ± 00 of 4 0.50Down
Hindgut24 ± 23 of 4 4.40Up
Heart4 ± 00 of 4 0.75None
Fat body24 ± 104 of 4 4.42Up
Ovary1 ± 00 of 4 0.20None
Testis1 ± 00 of 4 0.30None
Male accessory glands3 ± 10 of 4 0.60None
Virgin spermatheca6 ± 10 of 4 1.21None
Mated spermatheca9 ± 11 of 4 1.77None
Adult carcass19 ± 21 of 4 3.50Up
Larval CNS3 ± 10 of 4 0.68None
Larval Salivary gland4 ± 10 of 4 0.86None
Larval midgut3 ± 10 of 4 0.66None
Larval tubule2 ± 10 of 4 0.50None
Larval hindgut4 ± 10 of 4 0.82None
Larval fat body25 ± 30 of 4 4.50Up
Larval trachea1 ± 10 of 4 0.33None
Larval carcass18 ± 11 of 4 3.32Up
S2 cells (growing)15 ± 00 of 4 2.85Up
Whole fly5 ± 20 of 4



dihydropyrimidine amidohydrolase (CRMP):

Annotation Number : CG1411
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023023
Gbrowse : chr3R:1396829-1404913 (+) // 100.0 //
Probeset : 1639109_a_at
Accessions : protein= NP_477307; /// NP_730952; /// NP_730953; /// NP_730954;, nucleotide= NM_057959; /// NM_169070; /// NM_169071; /// NM_169072;
Interpro : "0004157 // dihydropyrimidinase activity // inferred from sequence or structural similarity /// 0004157 // dihydropyrimi
FlyMine data for FBgn0023023.
BDGP gene expression has embryonic in situ data for CRMP: 21 pix of staining in 7 body parts.
Homophila reports that CG1411 is a close match (3e-34) to human gene DHP;DPYS (NP_001376), a gene associated with Dihydropyrimidinuria (3).
TRiP has 1 RNAi stocks for FBgn0023023 available for purchase.
VDRC has 2 RNAi stocks for FBgn0023023 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain765 ± 224 of 4 6.00Up
Head439 ± 304 of 4 3.40Up
Eye308 ± 164 of 4 2.42Up
Thoracicoabdominal ganglion623 ± 194 of 4 4.90Up
Salivary gland588 ± 194 of 4 4.61Up
Crop434 ± 84 of 4 3.40Up
Midgut45 ± 24 of 4 0.40Down
Tubule19 ± 14 of 4 0.20Down
Hindgut465 ± 124 of 4 3.70Up
Heart248 ± 74 of 4 1.95Up
Fat body566 ± 474 of 4 4.44Up
Ovary23 ± 24 of 4 0.20Down
Testis17 ± 04 of 4 0.10Down
Male accessory glands57 ± 34 of 4 0.50Down
Virgin spermatheca740 ± 374 of 4 5.80Up
Mated spermatheca738 ± 484 of 4 5.80Up
Adult carcass234 ± 94 of 4 1.80Up
Larval CNS791 ± 504 of 4 6.21Up
Larval Salivary gland60 ± 84 of 4 0.48Down
Larval midgut24 ± 24 of 4 0.19Down
Larval tubule20 ± 24 of 4 0.20Down
Larval hindgut179 ± 94 of 4 1.40Up
Larval fat body385 ± 204 of 4 3.00Up
Larval trachea45 ± 114 of 4 0.36Down
Larval carcass541 ± 544 of 4 4.25Up
S2 cells (growing)130 ± 04 of 4 1.02None
Whole fly127 ± 144 of 4



dihydropyrimidine amidohydrolase (CRMP):

Annotation Number : CG1411
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023023
Gbrowse : chr3R:1396829-1401063 (+) // 100.0 //
Probeset : 1624674_at
Accessions : protein= NP_477307; /// NP_730952; /// NP_730953; /// NP_730954;, nucleotide= NM_057959; /// NM_169070; /// NM_169071; /// NM_169072;
Interpro : "0004157 // dihydropyrimidinase activity // inferred from sequence or structural similarity /// 0004157 // dihydropyrimi
FlyMine data for FBgn0023023.
BDGP gene expression has embryonic in situ data for CRMP: 21 pix of staining in 7 body parts.
Homophila reports that CG1411 is a close match (3e-34) to human gene DHP;DPYS (NP_001376), a gene associated with Dihydropyrimidinuria (3).
TRiP has 1 RNAi stocks for FBgn0023023 available for purchase.
VDRC has 2 RNAi stocks for FBgn0023023 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 11 of 4 5.60None
Head2 ± 10 of 4 3.00None
Eye3 ± 10 of 4 5.46None
Thoracicoabdominal ganglion1 ± 00 of 4 2.50None
Salivary gland3 ± 10 of 4 4.54None
Crop1 ± 00 of 4 1.50None
Midgut0 ± 00 of 4 0.40None
Tubule1 ± 00 of 4 2.00None
Hindgut0 ± 00 of 4 0.90None
Heart1 ± 00 of 4 1.96None
Fat body1 ± 10 of 4 1.85None
Ovary0 ± 00 of 4 0.40None
Testis1 ± 00 of 4 2.90None
Male accessory glands2 ± 10 of 4 3.90None
Virgin spermatheca1 ± 00 of 4 2.04None
Mated spermatheca1 ± 00 of 4 1.50None
Adult carcass4 ± 10 of 4 6.90None
Larval CNS1 ± 00 of 4 1.73None
Larval Salivary gland2 ± 00 of 4 3.42None
Larval midgut0 ± 00 of 4 0.69None
Larval tubule1 ± 10 of 4 2.70None
Larval hindgut1 ± 00 of 4 1.46None
Larval fat body1 ± 00 of 4 2.90None
Larval trachea2 ± 20 of 4 3.85None
Larval carcass0 ± 00 of 4 1.19None
S2 cells (growing)1 ± 00 of 4 2.85None
Whole fly0 ± 00 of 4

Looking for FBgn0023023. 5 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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