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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0023090 through 18771 annotations produced 1 hits



defective transmitter release (dtr):

Annotation Number : CG31623
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023090
Gbrowse : chr2L:21361417-21367199 (+) // 100.0 //
Probeset : 1635400_at
Accessions : protein= NP_724335;, nucleotide= NM_165375;
Pathway : 0005929 // cilium // inferred from electronic annotation /// 0035085 // cilium axoneme // inferred from sequence or stru
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0045502 // dynein binding // inferred from sequenc
FlyMine data for FBgn0023090.
TRiP has 1 RNAi stocks for FBgn0023090 available for purchase.
VDRC has 2 RNAi stocks for FBgn0023090 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.10Down
Head6 ± 11 of 4 0.10Down
Eye2 ± 10 of 4 0.06Down
Thoracicoabdominal ganglion5 ± 00 of 4 0.10Down
Salivary gland14 ± 00 of 4 0.35Down
Crop6 ± 12 of 4 0.20Down
Midgut0 ± 00 of 4 0.00Down
Tubule3 ± 00 of 4 0.10Down
Hindgut3 ± 01 of 4 0.10Down
Heart2 ± 11 of 4 0.06Down
Fat body12 ± 84 of 4 0.30Down
Ovary1 ± 00 of 4 0.00Down
Testis647 ± 54 of 416.00Up
Male accessory glands6 ± 00 of 4 0.20Down
Virgin spermatheca6 ± 11 of 4 0.15Down
Mated spermatheca6 ± 21 of 4 0.15Down
Adult carcass2 ± 00 of 4 0.10Down
Larval CNS6 ± 14 of 4 0.17Down
Larval Salivary gland6 ± 03 of 4 0.16Down
Larval midgut1 ± 00 of 4 0.04Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut4 ± 01 of 4 0.11Down
Larval fat body63 ± 324 of 4 1.60None
Larval trachea9 ± 34 of 4 0.24Down
Larval carcass1 ± 00 of 4 0.05Down
S2 cells (growing)2 ± 00 of 4 0.07Down
Whole fly40 ± 54 of 4

Looking for FBgn0023090. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime