FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0023094 through 18771 annotations produced 1 hits

chr3L:19806891-19809038 (-) // 100.0 // (cycle):

Annotation Number : CG8727
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1640765_at
Accessions : protein= , nucleotide= NP_524168;
Pathway : "0000122 // negative regulation of transcription from RNA polymerase II promoter // non-traceable author statement /// 0
Interpro : DNA-dependent // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic ann
FlyMine data for full length.
Homophila reports that CG8727 is a close match (5e-18) to human gene FASPS;KIAA0347;PER2 (NP_073728), a gene associated with Advanced sleep phase syndrome, familial, 604348 (3).

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	165 ± 1	4 of 4	0.80	Down
Head	126 ± 2	4 of 4	0.60	Down
Eye	172 ± 5	4 of 4	0.82	Down
Thoracicoabdominal ganglion	135 ± 3	4 of 4	0.60	Down
Salivary gland	252 ± 6	4 of 4	1.20	Up
Crop	126 ± 3	4 of 4	0.60	Down
Midgut	144 ± 6	4 of 4	0.70	Down
Tubule	147 ± 3	4 of 4	0.70	Down
Hindgut	122 ± 2	4 of 4	0.60	Down
Heart	94 ± 5	4 of 4	0.45	Down
Fat body	108 ± 6	4 of 4	0.51	Down
Ovary	392 ± 4	4 of 4	1.90	Up
Testis	39 ± 1	4 of 4	0.20	Down
Male accessory glands	303 ± 5	4 of 4	1.40	Up
Virgin spermatheca	218 ± 8	4 of 4	1.04	None
Mated spermatheca	192 ± 3	4 of 4	0.92	None
Adult carcass	100 ± 3	4 of 4	0.50	Down
Larval CNS	157 ± 16	4 of 4	0.75	Down
Larval Salivary gland	67 ± 4	4 of 4	0.32	Down
Larval midgut	35 ± 3	4 of 4	0.17	Down
Larval tubule	115 ± 2	4 of 4	0.50	Down
Larval hindgut	36 ± 2	4 of 4	0.17	Down
Larval fat body	106 ± 8	4 of 4	0.50	Down
Larval trachea	48 ± 6	4 of 4	0.23	Down
Larval carcass	32 ± 2	4 of 4	0.16	Down
S2 cells (growing)	113 ± 4	4 of 4	0.54	Down
Whole fly	209 ± 8	4 of 4

Looking for FBgn0023094. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720