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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0023094 through 18771 annotations produced 1 hits



chr3L:19806891-19809038 (-) // 100.0 // (cycle):

Annotation Number : CG8727
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1640765_at
Accessions : protein= , nucleotide= NP_524168;
Pathway : "0000122 // negative regulation of transcription from RNA polymerase II promoter // non-traceable author statement /// 0
Interpro : DNA-dependent // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic ann
FlyMine data for full length.
Homophila reports that CG8727 is a close match (5e-18) to human gene FASPS;KIAA0347;PER2 (NP_073728), a gene associated with Advanced sleep phase syndrome, familial, 604348 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain165 ± 14 of 4 0.80Down
Head126 ± 24 of 4 0.60Down
Eye172 ± 54 of 4 0.82Down
Thoracicoabdominal ganglion135 ± 34 of 4 0.60Down
Salivary gland252 ± 64 of 4 1.20Up
Crop126 ± 34 of 4 0.60Down
Midgut144 ± 64 of 4 0.70Down
Tubule147 ± 34 of 4 0.70Down
Hindgut122 ± 24 of 4 0.60Down
Heart94 ± 54 of 4 0.45Down
Fat body108 ± 64 of 4 0.51Down
Ovary392 ± 44 of 4 1.90Up
Testis39 ± 14 of 4 0.20Down
Male accessory glands303 ± 54 of 4 1.40Up
Virgin spermatheca218 ± 84 of 4 1.04None
Mated spermatheca192 ± 34 of 4 0.92None
Adult carcass100 ± 34 of 4 0.50Down
Larval CNS157 ± 164 of 4 0.75Down
Larval Salivary gland67 ± 44 of 4 0.32Down
Larval midgut35 ± 34 of 4 0.17Down
Larval tubule115 ± 24 of 4 0.50Down
Larval hindgut36 ± 24 of 4 0.17Down
Larval fat body106 ± 84 of 4 0.50Down
Larval trachea48 ± 64 of 4 0.23Down
Larval carcass32 ± 24 of 4 0.16Down
S2 cells (growing)113 ± 44 of 4 0.54Down
Whole fly209 ± 84 of 4

Looking for FBgn0023094. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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