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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0023096 through 18771 annotations produced 1 hits

beethoven (btv):

Annotation Number : CG15148
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023096
Gbrowse : chr2L:17964128-17982312 (-) // 100.0 //
Probeset : 1638983_at
Accessions : protein= NP_001036369;, nucleotide= NM_001042904;
Pathway : veined wing generated song production // inferred from mutant phenotype"
Interpro : 0005868 // cytoplasmic dynein complex // inferred from sequence or structural similarity /// 0005875 // microtubule asso
FlyMine data for FBgn0023096.
Homophila reports that CG15148 is a close match (3e-90) to human gene CILD3;DNAH5;HL1;KTGS2;PCD (NP_001360), a gene associated with Ciliary dyskinesia, primary, 3 608644 (3);Kartagener syndrome, 612272 (3).
TRiP has 1 RNAi stocks for FBgn0023096 available for purchase.
VDRC has 3 RNAi stocks for FBgn0023096 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.60None
Head8 13 of 4 1.50None
Eye5 21 of 4 1.02None
Thoracicoabdominal ganglion6 11 of 4 1.20None
Salivary gland16 100 of 4 3.06None
Crop5 01 of 4 1.10None
Midgut7 10 of 4 1.40None
Tubule4 00 of 4 0.80Down
Hindgut4 10 of 4 0.90None
Heart2 00 of 4 0.41None
Fat body5 50 of 4 1.05None
Ovary2 00 of 4 0.40None
Testis8 13 of 4 1.60None
Male accessory glands6 21 of 4 1.20None
Virgin spermatheca3 10 of 4 0.73None
Mated spermatheca1 00 of 4 0.19Down
Adult carcass9 00 of 4 1.80Up
Larval CNS3 20 of 4 0.59None
Larval Salivary gland6 20 of 4 1.25None
Larval midgut10 22 of 4 1.92None
Larval tubule6 01 of 4 1.20None
Larval hindgut5 02 of 4 0.99None
Larval fat body13 23 of 4 2.50Up
Larval trachea2 20 of 4 0.52None
Larval carcass2 00 of 4 0.39None
S2 cells (growing)2 00 of 4 0.46None
Whole fly5 11 of 4

Looking for FBgn0023096. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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