Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0023143 through 18771 annotations produced 1 hits



ubiquitin-activating enzyme (E1) (Uba1):

Annotation Number : CG1782
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023143
Gbrowse : chr2R:5575795-5580833 (-) // 100.0 //
Probeset : 1640089_at
Accessions : protein= NP_477310;, nucleotide= NM_057962;
Pathway : 0030425 // dendrite // inferred from mutant phenotype
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from
FlyMine data for FBgn0023143.
BDGP gene expression has embryonic in situ data for Uba1: 19 pix of staining in 20 body parts.
Homophila reports that CG1782 is a close match (0) to human gene A1ST;AMCX1;GXP1;SMAX2;UBE1 (NP_695012), a gene associated with Spinal muscular atrophy, X-linked 2, infantile, 301830 (3).
BioGrid reports that CG1782 interacts with CG3017 CG2540 CG7001 .
TRiP has 2 RNAi stocks for FBgn0023143 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain767 114 of 4 1.00None
Head582 294 of 4 0.80Down
Eye345 64 of 4 0.47Down
Thoracicoabdominal ganglion659 174 of 4 0.90Down
Salivary gland607 184 of 4 0.82Down
Crop966 244 of 4 1.30Up
Midgut510 174 of 4 0.70Down
Tubule1042 454 of 4 1.40Up
Hindgut905 384 of 4 1.20Up
Heart395 214 of 4 0.54Down
Fat body555 254 of 4 0.75Down
Ovary1316 524 of 4 1.80Up
Testis753 324 of 4 1.00None
Male accessory glands691 314 of 4 0.90None
Virgin spermatheca584 394 of 4 0.79Down
Mated spermatheca594 264 of 4 0.80Down
Adult carcass434 214 of 4 0.60Down
Larval CNS1257 624 of 4 1.70Up
Larval Salivary gland1154 324 of 4 1.56Up
Larval midgut927 344 of 4 1.26Up
Larval tubule1230 144 of 4 1.70Up
Larval hindgut1127 274 of 4 1.53Up
Larval fat body1598 814 of 4 2.20Up
Larval trachea707 734 of 4 0.96None
Larval carcass1520 504 of 4 2.06Up
S2 cells (growing)1410 154 of 4 1.91Up
Whole fly738 214 of 4

Looking for FBgn0023143. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime