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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0023167 through 18771 annotations produced 1 hits



gut feeling (SmD3):

Annotation Number : CG8427
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023167
Gbrowse : chr2R:8056230-8057514 (+) // 100.0 //
Probeset : 1635915_at
Accessions : protein= NP_725106;, nucleotide= NM_165866;
Pathway : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred from sequence or structural similarity /// 0006397 // mRNA processing // inferred from elec
FlyMine data for FBgn0023167.
TRiP has 2 RNAi stocks for FBgn0023167 available for purchase.
VDRC has 3 RNAi stocks for FBgn0023167 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain103 24 of 4 0.20Down
Head136 44 of 4 0.30Down
Eye185 124 of 4 0.42Down
Thoracicoabdominal ganglion92 34 of 4 0.20Down
Salivary gland158 94 of 4 0.36Down
Crop100 44 of 4 0.20Down
Midgut232 44 of 4 0.50Down
Tubule197 134 of 4 0.50Down
Hindgut168 64 of 4 0.40Down
Heart144 54 of 4 0.33Down
Fat body90 134 of 4 0.21Down
Ovary961 134 of 4 2.20Up
Testis335 124 of 4 0.80Down
Male accessory glands604 184 of 4 1.40Up
Virgin spermatheca72 34 of 4 0.17Down
Mated spermatheca96 104 of 4 0.22Down
Adult carcass119 184 of 4 0.30Down
Larval CNS747 884 of 4 1.71Up
Larval Salivary gland418 54 of 4 0.96None
Larval midgut208 54 of 4 0.48Down
Larval tubule485 154 of 4 1.10None
Larval hindgut229 84 of 4 0.53Down
Larval fat body202 164 of 4 0.50Down
Larval trachea585 614 of 4 1.34Up
Larval carcass192 54 of 4 0.44Down
S2 cells (growing)600 134 of 4 1.38Up
Whole fly436 174 of 4

Looking for FBgn0023167. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime