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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0023169 through 18771 annotations produced 1 hits



G protein-coupled receptor kinase 4 (SNF1A):

Annotation Number : CG3051
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023169
Gbrowse : chrX:1269579-1272890 (+) // 100.0 //
Probeset : 1629357_s_at
Accessions : protein= NP_477313; /// NP_726730; /// NP_996327;, nucleotide= NM_057965; /// NM_166880; /// NM_206604;
Pathway : engulfment // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from sequence or structural
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0031588 // A
FlyMine data for FBgn0023169.
Homophila reports that CG3051 is a close match (3e-11) to human gene BDB;BDB1;NTRKR2;ROR2 (NP_004551), a gene associated with Brachydactyly, type B1, 113000 (3);Robinow syndrome, autosomal recessive, 268310 (3).
BioGrid reports that CG3051 interacts with CG9083 .
TRiP has 3 RNAi stocks for FBgn0023169 available for purchase.
VDRC has 2 RNAi stocks for FBgn0023169 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain693 ± 124 of 4 1.70Up
Head632 ± 154 of 4 1.50Up
Eye962 ± 244 of 4 2.33Up
Thoracicoabdominal ganglion680 ± 194 of 4 1.60Up
Salivary gland1178 ± 514 of 4 2.85Up
Crop687 ± 204 of 4 1.70Up
Midgut636 ± 384 of 4 1.50Up
Tubule992 ± 294 of 4 2.40Up
Hindgut728 ± 144 of 4 1.80Up
Heart479 ± 194 of 4 1.16Up
Fat body536 ± 194 of 4 1.30Up
Ovary358 ± 64 of 4 0.90None
Testis197 ± 44 of 4 0.50Down
Male accessory glands564 ± 314 of 4 1.40Up
Virgin spermatheca631 ± 54 of 4 1.53Up
Mated spermatheca599 ± 164 of 4 1.45Up
Adult carcass820 ± 244 of 4 2.00Up
Larval CNS471 ± 154 of 4 1.14Up
Larval Salivary gland474 ± 184 of 4 1.15None
Larval midgut656 ± 194 of 4 1.59Up
Larval tubule781 ± 114 of 4 1.90Up
Larval hindgut796 ± 404 of 4 1.93Up
Larval fat body428 ± 314 of 4 1.00None
Larval trachea531 ± 534 of 4 1.29Up
Larval carcass534 ± 194 of 4 1.29Up
S2 cells (growing)566 ± 84 of 4 1.37Up
Whole fly412 ± 184 of 4

Looking for FBgn0023169. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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