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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0023170 through 18771 annotations produced 1 hits



Ribosomal protein L39 (RpL39):

Annotation Number : CG3997
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023170
Gbrowse : chr2R:19949372-19949952 (-) // 100.0 //
Probeset : 1626964_at
Accessions : protein= NP_477314;, nucleotide= NM_057966;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // non-traceable author statemen
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0023170.
BDGP gene expression has embryonic in situ data for RpL46: 4 pix of staining in 1 body parts.
BioGrid reports that CG3997 interacts with CG4821 CG5893 CG6459 CG7379 .
VDRC has 2 RNAi stocks for FBgn0023170 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3061 694 of 4 0.80Down
Head4338 2164 of 4 1.10None
Eye5857 1404 of 4 1.52Up
Thoracicoabdominal ganglion4442 844 of 4 1.20Up
Salivary gland10714 4834 of 4 2.79Up
Crop5513 3224 of 4 1.40Up
Midgut4537 994 of 4 1.20Up
Tubule5189 1024 of 4 1.30Up
Hindgut4430 864 of 4 1.20Up
Heart6443 4604 of 4 1.68Up
Fat body5931 8974 of 4 1.54Up
Ovary3325 884 of 4 0.90Down
Testis1490 384 of 4 0.40Down
Male accessory glands8526 1974 of 4 2.20Up
Virgin spermatheca6245 1804 of 4 1.62Up
Mated spermatheca6426 1644 of 4 1.67Up
Adult carcass5575 2144 of 4 1.50Up
Larval CNS2832 1964 of 4 0.74Down
Larval Salivary gland8181 2904 of 4 2.13Up
Larval midgut4629 964 of 4 1.20Up
Larval tubule4689 364 of 4 1.20Up
Larval hindgut4768 594 of 4 1.24Up
Larval fat body6804 7484 of 4 1.80Up
Larval trachea5482 734 of 4 1.43Up
Larval carcass4713 3414 of 4 1.23None
S2 cells (growing)4584 914 of 4 1.19Up
Whole fly3844 1664 of 4

Looking for FBgn0023170. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime