FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0023172 through 18771 annotations produced 1 hits

Shar pei (RhoGEF2):

Annotation Number : CG9635
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023172
Gbrowse : chr2R:12914752-12932165 (+) // 100.0 //
Probeset : 1634904_s_at
Accessions : protein= NP_477317; /// NP_995868; /// NP_995869;, nucleotide= NM_057969; /// NM_206146; /// NM_206147;
Pathway : open tracheal system // inferred from mutant phenotype /// 0050770 // regulation of axonogenesis // inferred from genet
Interpro : 0005622 // intracellular // inferred from electronic annotation /// 0005826 // actomyosin contractile ring // inferred f
FlyMine data for FBgn0023172.
BioGrid reports that CG9635 interacts with CG9559 CG8416 CG8416 .
TRiP has 2 RNAi stocks for FBgn0023172 available for purchase.
VDRC has 1 RNAi stocks for FBgn0023172 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	199 ± 6	4 of 4	0.90	None
Head	235 ± 8	4 of 4	1.10	None
Eye	312 ± 21	4 of 4	1.46	Up
Thoracicoabdominal ganglion	158 ± 4	4 of 4	0.70	Down
Salivary gland	265 ± 10	4 of 4	1.24	None
Crop	385 ± 13	4 of 4	1.80	Up
Midgut	351 ± 6	4 of 4	1.60	Up
Tubule	280 ± 5	4 of 4	1.30	Up
Hindgut	507 ± 9	4 of 4	2.40	Up
Heart	230 ± 10	4 of 4	1.08	None
Fat body	265 ± 26	4 of 4	1.24	None
Ovary	428 ± 3	4 of 4	2.00	Up
Testis	43 ± 1	4 of 4	0.20	Down
Male accessory glands	200 ± 6	4 of 4	0.90	None
Virgin spermatheca	374 ± 19	4 of 4	1.75	Up
Mated spermatheca	330 ± 18	4 of 4	1.54	Up
Adult carcass	268 ± 18	4 of 4	1.30	None
Larval CNS	285 ± 15	4 of 4	1.33	Up
Larval Salivary gland	285 ± 6	4 of 4	1.33	Up
Larval midgut	385 ± 23	4 of 4	1.80	Up
Larval tubule	366 ± 14	4 of 4	1.70	Up
Larval hindgut	475 ± 11	4 of 4	2.22	Up
Larval fat body	260 ± 21	4 of 4	1.20	None
Larval trachea	243 ± 25	4 of 4	1.13	None
Larval carcass	325 ± 38	4 of 4	1.52	None
S2 cells (growing)	416 ± 6	4 of 4	1.94	Up
Whole fly	214 ± 17	4 of 4

Looking for FBgn0023172. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720