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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0023177 through 18771 annotations produced 1 hits



Protein phosphatase X (Pp4-19C):

Annotation Number : CG32505
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023177
Gbrowse : chrX:20292113-20295045 (-) // 100.0 //
Probeset : 1623506_s_at
Accessions : protein= NP_524803; /// NP_728342;, nucleotide= NM_080064; /// NM_167703;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 00057
Interpro : 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/thre
FlyMine data for FBgn0023177.
BDGP gene expression has embryonic in situ data for Pp4-19C: 9 pix of staining in 6 body parts.
TRiP has 2 RNAi stocks for FBgn0023177 available for purchase.
VDRC has 1 RNAi stocks for FBgn0023177 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain161 44 of 4 0.60Down
Head120 54 of 4 0.50Down
Eye139 34 of 4 0.52Down
Thoracicoabdominal ganglion141 34 of 4 0.50Down
Salivary gland162 54 of 4 0.61Down
Crop211 54 of 4 0.80Down
Midgut151 84 of 4 0.60Down
Tubule202 104 of 4 0.80Down
Hindgut132 64 of 4 0.50Down
Heart92 34 of 4 0.34Down
Fat body108 154 of 4 0.41Down
Ovary534 114 of 4 2.00Up
Testis41 22 of 4 0.20Down
Male accessory glands127 24 of 4 0.50Down
Virgin spermatheca113 74 of 4 0.42Down
Mated spermatheca112 44 of 4 0.42Down
Adult carcass94 34 of 4 0.40Down
Larval CNS661 244 of 4 2.48Up
Larval Salivary gland368 114 of 4 1.38Up
Larval midgut220 104 of 4 0.82Down
Larval tubule370 64 of 4 1.40Up
Larval hindgut255 154 of 4 0.96None
Larval fat body147 74 of 4 0.50Down
Larval trachea322 194 of 4 1.21Up
Larval carcass292 54 of 4 1.09Up
S2 cells (growing)502 104 of 4 1.88Up
Whole fly267 54 of 4

Looking for FBgn0023177. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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