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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0023179 through 18771 annotations produced 1 hits



amontillado (amon):

Annotation Number : CG6438
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023179
Gbrowse : chr3R:22523417-22539881 (-) // 100.0 //
Probeset : 1625280_at
Accessions : protein= NP_477318;, nucleotide= NM_057970;
Pathway : 0005576 // extracellular region // inferred from direct assay
Interpro : 0004252 // serine-type endopeptidase activity // inferred from sequence or structural similarity /// 0004252 // serine-t
FlyMine data for FBgn0023179.
BDGP gene expression has embryonic in situ data for amon: 18 pix of staining in 6 body parts.
Homophila reports that CG6438 is a close match (1e-124) to human gene BMIQ12;NEC1;PC1;PC3;PCSK1 (NP_000430), a gene associated with Obesity with impaired prohormone processing, 600955 (3);{Obesity, susceptiblity to, BMIQ12}, 612362 (3).
TRiP has 2 RNAi stocks for FBgn0023179 available for purchase.
VDRC has 2 RNAi stocks for FBgn0023179 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain697 ± 454 of 433.10Up
Head193 ± 104 of 4 9.20Up
Eye2 ± 11 of 4 0.12Down
Thoracicoabdominal ganglion614 ± 234 of 429.20Up
Salivary gland7 ± 20 of 4 0.34Down
Crop3 ± 00 of 4 0.10Down
Midgut15 ± 04 of 4 0.70None
Tubule2 ± 00 of 4 0.10Down
Hindgut3 ± 00 of 4 0.20Down
Heart0 ± 00 of 4 0.04Down
Fat body6 ± 12 of 4 0.31Down
Ovary3 ± 01 of 4 0.20Down
Testis1 ± 00 of 4 0.10Down
Male accessory glands1 ± 10 of 4 0.10Down
Virgin spermatheca2 ± 00 of 4 0.11Down
Mated spermatheca5 ± 11 of 4 0.25Down
Adult carcass13 ± 23 of 4 0.60None
Larval CNS11 ± 14 of 4 0.55None
Larval Salivary gland4 ± 21 of 4 0.21Down
Larval midgut2 ± 00 of 4 0.10Down
Larval tubule2 ± 00 of 4 0.10Down
Larval hindgut2 ± 01 of 4 0.11Down
Larval fat body5 ± 10 of 4 0.30Down
Larval trachea2 ± 10 of 4 0.11Down
Larval carcass1 ± 00 of 4 0.06Down
S2 cells (growing)1 ± 00 of 4 0.07Down
Whole fly21 ± 44 of 4

Looking for FBgn0023179. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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