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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0023181 through 18771 annotations produced 1 hits



Origin recognition complex subunit 4 (Orc4):

Annotation Number : CG2917
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023181
Gbrowse : chr2R:20683262-20684927 (-) // 100.0 //
Probeset : 1639877_at
Accessions : protein= NP_477320;, nucleotide= NM_057972;
Pathway : 0000808 // origin recognition complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from ele
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electro
FlyMine data for FBgn0023181.
BDGP gene expression has embryonic in situ data for Orc4: 24 pix of staining in 8 body parts.
BioGrid reports that CG2917 interacts with CG9160 CG15676 CG5708 CG7948 CG5731 CG15218 CG31811 CG2189 CG8591 CG16932 CG11206 CG6923 .
TRiP has 1 RNAi stocks for FBgn0023181 available for purchase.
VDRC has 3 RNAi stocks for FBgn0023181 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain32 24 of 4 0.30Down
Head21 24 of 4 0.20Down
Eye27 34 of 4 0.25Down
Thoracicoabdominal ganglion30 14 of 4 0.30Down
Salivary gland16 51 of 4 0.15Down
Crop23 14 of 4 0.20Down
Midgut11 11 of 4 0.10Down
Tubule12 13 of 4 0.10Down
Hindgut17 04 of 4 0.20Down
Heart27 04 of 4 0.25Down
Fat body21 14 of 4 0.19Down
Ovary219 34 of 4 2.00Up
Testis78 54 of 4 0.70Down
Male accessory glands28 14 of 4 0.30Down
Virgin spermatheca17 04 of 4 0.16Down
Mated spermatheca25 24 of 4 0.23Down
Adult carcass23 14 of 4 0.20Down
Larval CNS126 84 of 4 1.13None
Larval Salivary gland65 24 of 4 0.59Down
Larval midgut11 01 of 4 0.11Down
Larval tubule12 04 of 4 0.10Down
Larval hindgut21 24 of 4 0.19Down
Larval fat body33 64 of 4 0.30Down
Larval trachea68 54 of 4 0.62Down
Larval carcass30 14 of 4 0.27Down
S2 cells (growing)91 34 of 4 0.82Down
Whole fly111 44 of 4

Looking for FBgn0023181. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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