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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0023215 through 18771 annotations produced 1 hits



Mnt (Mnt):

Annotation Number : CG13316
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023215
Gbrowse : chrX:3582269-3594819 (+) // 100.0 //
Probeset : 1634131_s_at
Accessions : protein= NP_001162651; /// NP_001162652; /// NP_001162653; /// NP_001162654; /// NP_570071; /// NP_726879; /// NP_726880;, nucleotide= NM_001169180; /// NM_001169181; /// NM_001169182; /// NM_001169183; /// NM_130715; /// NM_166983; /// NM_166984;
Pathway : engulfment // inferred from mutant phenotype /// 0030308 // negative regulation of cell growth // inferred from mutant
Interpro : 0005634 // nucleus // inferred by curator /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus //
FlyMine data for FBgn0023215.
BDGP gene expression has embryonic in situ data for Mnt: 29 pix of staining in 11 body parts.
TRiP has 2 RNAi stocks for FBgn0023215 available for purchase.
VDRC has 3 RNAi stocks for FBgn0023215 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain156 104 of 4 2.40Up
Head63 134 of 4 1.00None
Eye131 104 of 4 1.99Up
Thoracicoabdominal ganglion118 214 of 4 1.80None
Salivary gland60 182 of 4 0.91None
Crop102 44 of 4 1.60Up
Midgut49 44 of 4 0.80None
Tubule38 23 of 4 0.60Down
Hindgut81 64 of 4 1.20None
Heart109 64 of 4 1.67Up
Fat body86 174 of 4 1.31None
Ovary116 74 of 4 1.80Up
Testis26 14 of 4 0.40Down
Male accessory glands51 64 of 4 0.80None
Virgin spermatheca59 54 of 4 0.90None
Mated spermatheca65 34 of 4 0.98None
Adult carcass65 103 of 4 1.00None
Larval CNS78 74 of 4 1.19None
Larval Salivary gland81 24 of 4 1.24None
Larval midgut42 31 of 4 0.65Down
Larval tubule113 44 of 4 1.70Up
Larval hindgut81 64 of 4 1.23None
Larval fat body77 24 of 4 1.20None
Larval trachea66 84 of 4 1.00None
Larval carcass50 24 of 4 0.77None
S2 cells (growing)64 24 of 4 0.98None
Whole fly66 54 of 4

Looking for FBgn0023215. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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