Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0023395 through 18771 annotations produced 1 hits


Chd3 (Chd3):

Annotation Number : CG9594
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023395
Gbrowse : chr3L:19440274-19443337 (+) // 100.0 //
Probeset : 1630786_at
Accessions : protein= NP_649111;, nucleotide= NM_140854;
Pathway : 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structur
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0023395.
Homophila reports that CG9594 is a close match (2e-14) to human gene AIRE;APECED (NP_000374), a gene associated with Autoimmune polyglandular disease, type I, 240300 (3).
TRiP has 2 RNAi stocks for FBgn0023395 available for purchase.
VDRC has 2 RNAi stocks for FBgn0023395 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.00Down
Head2 ± 00 of 4 0.00Down
Eye0 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.00Down
Salivary gland10 ± 30 of 4 0.09Down
Crop7 ± 10 of 4 0.10Down
Midgut8 ± 00 of 4 0.10Down
Tubule5 ± 10 of 4 0.00Down
Hindgut5 ± 10 of 4 0.00Down
Heart2 ± 10 of 4 0.02Down
Fat body10 ± 22 of 4 0.09Down
Ovary392 ± 104 of 4 3.50Up
Testis84 ± 84 of 4 0.80None
Male accessory glands6 ± 20 of 4 0.10Down
Virgin spermatheca5 ± 10 of 4 0.05Down
Mated spermatheca6 ± 10 of 4 0.06Down
Adult carcass8 ± 30 of 4 0.10Down
Larval CNS119 ± 94 of 4 1.07None
Larval Salivary gland4 ± 10 of 4 0.04Down
Larval midgut12 ± 11 of 4 0.11Down
Larval tubule7 ± 20 of 4 0.10Down
Larval hindgut7 ± 11 of 4 0.07Down
Larval fat body31 ± 92 of 4 0.30Down
Larval trachea10 ± 43 of 4 0.09Down
Larval carcass10 ± 11 of 4 0.09Down
S2 cells (growing)67 ± 04 of 4 0.60Down
Whole fly112 ± 84 of 4

Looking for FBgn0023395. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime