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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0023407 through 18771 annotations produced 2 hits



B4 (B4):

Annotation Number : CT26204
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023407
Gbrowse : chr2L:13546891-13549321 (-) // 100.0 //
Probeset : 1627501_s_at
Accessions : protein= NP_477325; /// NP_723823;, nucleotide= NM_057977; /// NM_165046;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0023407.
TRiP has 1 RNAi stocks for FBgn0023407 available for purchase.
VDRC has 2 RNAi stocks for FBgn0023407 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain28 24 of 4 6.30Up
Head1 00 of 4 0.40None
Eye6 00 of 4 1.46None
Thoracicoabdominal ganglion20 40 of 4 4.60Up
Salivary gland4 00 of 4 0.97None
Crop5 20 of 4 1.20None
Midgut3 10 of 4 0.70None
Tubule1 00 of 4 0.30Down
Hindgut6 20 of 4 1.50None
Heart5 10 of 4 1.27None
Fat body2 00 of 4 0.56None
Ovary4 00 of 4 0.90None
Testis1 00 of 4 0.40None
Male accessory glands1 00 of 4 0.30None
Virgin spermatheca1 00 of 4 0.35None
Mated spermatheca1 00 of 4 0.43None
Adult carcass1 00 of 4 0.40None
Larval CNS15 32 of 4 3.48Up
Larval Salivary gland2 00 of 4 0.45None
Larval midgut3 10 of 4 0.74None
Larval tubule1 00 of 4 0.30None
Larval hindgut2 00 of 4 0.48None
Larval fat body3 10 of 4 0.70None
Larval trachea2 30 of 4 0.65None
Larval carcass1 00 of 4 0.35None
S2 cells (growing)35 23 of 4 8.08Up
Whole fly4 10 of 4



B4 (B4):

Annotation Number : CG9239
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023407
Gbrowse : chr2L:13502655-13549323 (-) // 100.0 //
Probeset : 1639566_s_at
Accessions : protein= NP_477325; /// NP_723823;, nucleotide= NM_057977; /// NM_165046;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0023407.
BioGrid reports that CG9239 interacts with CG9793 .
TRiP has 1 RNAi stocks for FBgn0023407 available for purchase.
VDRC has 2 RNAi stocks for FBgn0023407 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain187 54 of 4 1.30None
Head274 184 of 4 1.90Up
Eye303 224 of 4 2.07Up
Thoracicoabdominal ganglion190 74 of 4 1.30Up
Salivary gland657 274 of 4 4.50Up
Crop365 134 of 4 2.50Up
Midgut180 104 of 4 1.20None
Tubule151 254 of 4 1.00None
Hindgut671 114 of 4 4.60Up
Heart234 124 of 4 1.60Up
Fat body273 504 of 4 1.87Up
Ovary111 34 of 4 0.80None
Testis39 14 of 4 0.30Down
Male accessory glands35 14 of 4 0.20Down
Virgin spermatheca650 294 of 4 4.45Up
Mated spermatheca540 284 of 4 3.70Up
Adult carcass242 24 of 4 1.70Up
Larval CNS480 444 of 4 3.29Up
Larval Salivary gland219 164 of 4 1.50Up
Larval midgut118 94 of 4 0.81None
Larval tubule63 44 of 4 0.40Down
Larval hindgut228 104 of 4 1.56Up
Larval fat body42 24 of 4 0.30Down
Larval trachea157 164 of 4 1.08None
Larval carcass146 94 of 4 1.00None
S2 cells (growing)339 214 of 4 2.32Up
Whole fly146 144 of 4

Looking for FBgn0023407. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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