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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0023416 through 18771 annotations produced 1 hits



Ac3 (Ac3):

Annotation Number : CG1506
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023416
Gbrowse : chr2L:21632598-21647967 (+) // 100.0 //
Probeset : 1625072_s_at
Accessions : protein= NP_001014496; /// NP_610116;, nucleotide= NM_001014496; /// NM_136272;
Pathway : 0016021 // integral to membrane // non-traceable author statement
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004016 // adenylate cyclase activity // inferr
FlyMine data for FBgn0023416.
Homophila reports that CG1506 is a close match (3e-21) to human gene CORD6;GUC2D;GUCY2D;LCA1 (NP_000171), a gene associated with Cone-rod dystrophy 6, 601777(3);Leber congenital amaurosis I, 204000 (3).
TRiP has 1 RNAi stocks for FBgn0023416 available for purchase.
VDRC has 1 RNAi stocks for FBgn0023416 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain709 384 of 437.20Up
Head155 234 of 4 8.10Up
Eye36 44 of 4 1.89Up
Thoracicoabdominal ganglion630 254 of 433.00Up
Salivary gland13 20 of 4 0.68None
Crop2 20 of 4 0.10Down
Midgut2 00 of 4 0.10Down
Tubule2 00 of 4 0.10Down
Hindgut3 00 of 4 0.20Down
Heart2 00 of 4 0.11Down
Fat body7 33 of 4 0.38Down
Ovary2 01 of 4 0.10Down
Testis1 00 of 4 0.10Down
Male accessory glands3 00 of 4 0.20Down
Virgin spermatheca2 10 of 4 0.13Down
Mated spermatheca1 00 of 4 0.09Down
Adult carcass7 20 of 4 0.40Down
Larval CNS345 294 of 418.10Up
Larval Salivary gland4 01 of 4 0.24Down
Larval midgut1 00 of 4 0.09Down
Larval tubule1 00 of 4 0.10Down
Larval hindgut2 11 of 4 0.15Down
Larval fat body3 10 of 4 0.20Down
Larval trachea2 10 of 4 0.15Down
Larval carcass3 00 of 4 0.18Down
S2 cells (growing)68 64 of 4 3.59Up
Whole fly19 14 of 4

Looking for FBgn0023416. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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