FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0023423 through 18771 annotations produced 1 hits

pingiel (slmb):

Annotation Number : CG3412
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023423
Gbrowse : chr3R:16944972-16953202 (-) // 100.0 //
Probeset : 1635960_at
Accessions : protein= NP_524430;, nucleotide= NM_079706;
Pathway : 0000151 // ubiquitin ligase complex // inferred from sequence or structural similarity /// 0019005 // SCF ubiquitin liga
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin
FlyMine data for FBgn0023423.
BDGP gene expression has embryonic in situ data for slmb: 17 pix of staining in 14 body parts.
Homophila reports that CG3412 is a close match (6e-14) to human gene CFEOM1;FEOM1;KIAA1708;KIF21A (NP_060111), a gene associated with Fibrosis of extraocular muscles, congenital, 1, 135700 (3).
BioGrid reports that CG3412 interacts with CG8206 CG11561 CG11561 CG2647 .
TRiP has 3 RNAi stocks for FBgn0023423 available for purchase.
VDRC has 3 RNAi stocks for FBgn0023423 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	340 ± 4	4 of 4	2.00	Up
Head	167 ± 11	4 of 4	1.00	None
Eye	99 ± 3	4 of 4	0.59	Down
Thoracicoabdominal ganglion	289 ± 12	4 of 4	1.70	Up
Salivary gland	171 ± 3	4 of 4	1.02	None
Crop	172 ± 4	4 of 4	1.00	None
Midgut	106 ± 5	4 of 4	0.60	Down
Tubule	157 ± 9	4 of 4	0.90	None
Hindgut	146 ± 6	4 of 4	0.90	Down
Heart	82 ± 6	4 of 4	0.49	Down
Fat body	179 ± 21	4 of 4	1.07	None
Ovary	295 ± 7	4 of 4	1.80	Up
Testis	31 ± 3	4 of 4	0.20	Down
Male accessory glands	182 ± 8	4 of 4	1.10	None
Virgin spermatheca	155 ± 8	4 of 4	0.93	None
Mated spermatheca	124 ± 8	4 of 4	0.74	Down
Adult carcass	100 ± 1	4 of 4	0.60	Down
Larval CNS	311 ± 41	4 of 4	1.86	Up
Larval Salivary gland	220 ± 14	4 of 4	1.31	Up
Larval midgut	134 ± 16	4 of 4	0.80	None
Larval tubule	275 ± 16	4 of 4	1.60	Up
Larval hindgut	259 ± 11	4 of 4	1.55	Up
Larval fat body	185 ± 20	4 of 4	1.10	None
Larval trachea	116 ± 17	4 of 4	0.70	Down
Larval carcass	231 ± 12	4 of 4	1.38	Up
S2 cells (growing)	164 ± 9	4 of 4	0.98	None
Whole fly	167 ± 4	4 of 4

Looking for FBgn0023423. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720