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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0023479 through 18771 annotations produced 3 hits



Tequila (Tequila):

Annotation Number : CG4821
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023479
Gbrowse : chr3L:9067757-9085225 (+) // 100.0 //
Probeset : 1624957_a_at
Accessions : protein= NP_001163393; /// NP_648288; /// NP_729451; /// NP_729452; /// NP_729453;, nucleotide= NM_001169922; /// NM_140031; /// NM_168314; /// NM_168315; /// NM_168316;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0016020 // membrane // inferred from electron
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0023479.
Homophila reports that CG4821 is a close match (3e-11) to human gene ELA2 (NP_001963), a gene associated with Hematopoiesis, cyclic, 162800 (3);Neutropenia, congenital, 202700 (3).
BioGrid reports that CG4821 interacts with CG4972 CG5180 CG5441 CG5676 CG5760 CG6283 CG8495 CG9593 CG9637 CG30425 .
TRiP has 1 RNAi stocks for FBgn0023479 available for purchase.
VDRC has 2 RNAi stocks for FBgn0023479 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain369 134 of 4 2.20Up
Head889 794 of 4 5.20Up
Eye180 584 of 4 1.05None
Thoracicoabdominal ganglion300 84 of 4 1.80Up
Salivary gland15 30 of 4 0.09Down
Crop26 24 of 4 0.20Down
Midgut7 11 of 4 0.00Down
Tubule61 103 of 4 0.40Down
Hindgut78 54 of 4 0.50Down
Heart462 464 of 4 2.70Up
Fat body990 2564 of 4 5.78Up
Ovary3 10 of 4 0.00Down
Testis3 10 of 4 0.00Down
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca1291 854 of 4 7.54Up
Mated spermatheca871 604 of 4 5.09Up
Adult carcass629 564 of 4 3.70Up
Larval CNS6 13 of 4 0.04Down
Larval Salivary gland30 34 of 4 0.18Down
Larval midgut8 12 of 4 0.05Down
Larval tubule18 32 of 4 0.10Down
Larval hindgut7 30 of 4 0.04Down
Larval fat body1185 1894 of 4 6.90Up
Larval trachea7 42 of 4 0.04Down
Larval carcass8 10 of 4 0.05Down
S2 cells (growing)1444 494 of 4 8.44Up
Whole fly171 164 of 4



CG34104 /// Tequila ():

Annotation Number : Transposon.6
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : 31945 /// 39048
Gbrowse : /// Tequila
Probeset : 1640167_s_at
Accessions : protein= NM_001042801; /// NM_001042802; /// NM_001169922; /// NM_140031; /// NM_142161; /// NM_168314; /// NM_168315; /// NM_168316;, nucleotide= FBgn0023479 /// FBgn0083940
Pathway : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from
FlyMine data for 31945 /// 39048.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain682 74 of 4 4.20Up
Head407 294 of 4 2.50Up
Eye406 244 of 4 2.49Up
Thoracicoabdominal ganglion724 194 of 4 4.40Up
Salivary gland286 74 of 4 1.76Up
Crop284 234 of 4 1.70Up
Midgut158 134 of 4 1.00None
Tubule52 34 of 4 0.30Down
Hindgut179 44 of 4 1.10None
Heart359 134 of 4 2.21Up
Fat body747 1464 of 4 4.58Up
Ovary36 34 of 4 0.20Down
Testis56 34 of 4 0.30Down
Male accessory glands186 304 of 4 1.10None
Virgin spermatheca658 404 of 4 4.04Up
Mated spermatheca826 364 of 4 5.06Up
Adult carcass287 34 of 4 1.80Up
Larval CNS271 464 of 4 1.67Up
Larval Salivary gland77 84 of 4 0.47Down
Larval midgut39 54 of 4 0.24Down
Larval tubule110 44 of 4 0.70None
Larval hindgut95 94 of 4 0.59Down
Larval fat body1196 994 of 4 7.30Up
Larval trachea86 184 of 4 0.53Down
Larval carcass115 424 of 4 0.71None
S2 cells (growing)819 204 of 4 5.02Up
Whole fly163 194 of 4



Tequila (Tequila):

Annotation Number : CG4821
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023479
Gbrowse : chr3L:9067781-9070556 (+) // 99.82 //
Probeset : 1626427_a_at
Accessions : protein= NP_001163393; /// NP_648288; /// NP_729451; /// NP_729452; /// NP_729453;, nucleotide= NM_001169922; /// NM_140031; /// NM_168314; /// NM_168315; /// NM_168316;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0016020 // membrane // inferred from electron
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0023479.
Homophila reports that CG4821 is a close match (3e-11) to human gene ELA2 (NP_001963), a gene associated with Hematopoiesis, cyclic, 162800 (3);Neutropenia, congenital, 202700 (3).
BioGrid reports that CG4821 interacts with CG4972 CG5180 CG5441 CG5676 CG5760 CG6283 CG8495 CG9593 CG9637 CG30425 .
TRiP has 1 RNAi stocks for FBgn0023479 available for purchase.
VDRC has 2 RNAi stocks for FBgn0023479 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain29 24 of 4 1.40None
Head54 94 of 4 2.60Up
Eye96 94 of 4 4.58Up
Thoracicoabdominal ganglion57 34 of 4 2.70Up
Salivary gland19 30 of 4 0.92None
Crop4 10 of 4 0.20Down
Midgut2 00 of 4 0.10Down
Tubule4 00 of 4 0.20Down
Hindgut10 10 of 4 0.50None
Heart165 144 of 4 7.88Up
Fat body288 844 of 413.72Up
Ovary2 00 of 4 0.10Down
Testis10 14 of 4 0.50None
Male accessory glands6 10 of 4 0.30Down
Virgin spermatheca259 254 of 412.34Up
Mated spermatheca342 334 of 416.29Up
Adult carcass131 74 of 4 6.30Up
Larval CNS9 12 of 4 0.46None
Larval Salivary gland16 30 of 4 0.77None
Larval midgut3 10 of 4 0.17Down
Larval tubule4 20 of 4 0.20Down
Larval hindgut17 11 of 4 0.82None
Larval fat body620 704 of 429.50Up
Larval trachea14 111 of 4 0.68None
Larval carcass6 20 of 4 0.30Down
S2 cells (growing)86 124 of 4 4.13Up
Whole fly21 44 of 4

Looking for FBgn0023479. 3 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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