FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0023479 through 18771 annotations produced 3 hits

CG34104 /// Tequila ():

Annotation Number : Transposon.6
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : 31945 /// 39048
Gbrowse : /// Tequila
Probeset : 1640167_s_at
Accessions : protein= NM_001042801; /// NM_001042802; /// NM_001169922; /// NM_140031; /// NM_142161; /// NM_168314; /// NM_168315; /// NM_168316;, nucleotide= FBgn0023479 /// FBgn0083940
Pathway : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from
FlyMine data for 31945 /// 39048.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	682 ± 7	4 of 4	4.20	Up
Head	407 ± 29	4 of 4	2.50	Up
Eye	406 ± 24	4 of 4	2.49	Up
Thoracicoabdominal ganglion	724 ± 19	4 of 4	4.40	Up
Salivary gland	286 ± 7	4 of 4	1.76	Up
Crop	284 ± 23	4 of 4	1.70	Up
Midgut	158 ± 13	4 of 4	1.00	None
Tubule	52 ± 3	4 of 4	0.30	Down
Hindgut	179 ± 4	4 of 4	1.10	None
Heart	359 ± 13	4 of 4	2.21	Up
Fat body	747 ± 146	4 of 4	4.58	Up
Ovary	36 ± 3	4 of 4	0.20	Down
Testis	56 ± 3	4 of 4	0.30	Down
Male accessory glands	186 ± 30	4 of 4	1.10	None
Virgin spermatheca	658 ± 40	4 of 4	4.04	Up
Mated spermatheca	826 ± 36	4 of 4	5.06	Up
Adult carcass	287 ± 3	4 of 4	1.80	Up
Larval CNS	271 ± 46	4 of 4	1.67	Up
Larval Salivary gland	77 ± 8	4 of 4	0.47	Down
Larval midgut	39 ± 5	4 of 4	0.24	Down
Larval tubule	110 ± 4	4 of 4	0.70	None
Larval hindgut	95 ± 9	4 of 4	0.59	Down
Larval fat body	1196 ± 99	4 of 4	7.30	Up
Larval trachea	86 ± 18	4 of 4	0.53	Down
Larval carcass	115 ± 42	4 of 4	0.71	None
S2 cells (growing)	819 ± 20	4 of 4	5.02	Up
Whole fly	163 ± 19	4 of 4

Tequila (Tequila):

Annotation Number : CG4821
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023479
Gbrowse : chr3L:9067781-9070556 (+) // 99.82 //
Probeset : 1626427_a_at
Accessions : protein= NP_001163393; /// NP_648288; /// NP_729451; /// NP_729452; /// NP_729453;, nucleotide= NM_001169922; /// NM_140031; /// NM_168314; /// NM_168315; /// NM_168316;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0016020 // membrane // inferred from electron
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0023479.
Homophila reports that CG4821 is a close match (3e-11) to human gene ELA2 (NP_001963), a gene associated with Hematopoiesis, cyclic, 162800 (3);Neutropenia, congenital, 202700 (3).
BioGrid reports that CG4821 interacts with CG4972 CG5180 CG5441 CG5676 CG5760 CG6283 CG8495 CG9593 CG9637 CG30425 .
TRiP has 1 RNAi stocks for FBgn0023479 available for purchase.
VDRC has 2 RNAi stocks for FBgn0023479 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	29 ± 2	4 of 4	1.40	None
Head	54 ± 9	4 of 4	2.60	Up
Eye	96 ± 9	4 of 4	4.58	Up
Thoracicoabdominal ganglion	57 ± 3	4 of 4	2.70	Up
Salivary gland	19 ± 3	0 of 4	0.92	None
Crop	4 ± 1	0 of 4	0.20	Down
Midgut	2 ± 0	0 of 4	0.10	Down
Tubule	4 ± 0	0 of 4	0.20	Down
Hindgut	10 ± 1	0 of 4	0.50	None
Heart	165 ± 14	4 of 4	7.88	Up
Fat body	288 ± 84	4 of 4	13.72	Up
Ovary	2 ± 0	0 of 4	0.10	Down
Testis	10 ± 1	4 of 4	0.50	None
Male accessory glands	6 ± 1	0 of 4	0.30	Down
Virgin spermatheca	259 ± 25	4 of 4	12.34	Up
Mated spermatheca	342 ± 33	4 of 4	16.29	Up
Adult carcass	131 ± 7	4 of 4	6.30	Up
Larval CNS	9 ± 1	2 of 4	0.46	None
Larval Salivary gland	16 ± 3	0 of 4	0.77	None
Larval midgut	3 ± 1	0 of 4	0.17	Down
Larval tubule	4 ± 2	0 of 4	0.20	Down
Larval hindgut	17 ± 1	1 of 4	0.82	None
Larval fat body	620 ± 70	4 of 4	29.50	Up
Larval trachea	14 ± 11	1 of 4	0.68	None
Larval carcass	6 ± 2	0 of 4	0.30	Down
S2 cells (growing)	86 ± 12	4 of 4	4.13	Up
Whole fly	21 ± 4	4 of 4

Tequila (Tequila):

Annotation Number : CG4821
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023479
Gbrowse : chr3L:9067757-9085225 (+) // 100.0 //
Probeset : 1624957_a_at
Accessions : protein= NP_001163393; /// NP_648288; /// NP_729451; /// NP_729452; /// NP_729453;, nucleotide= NM_001169922; /// NM_140031; /// NM_168314; /// NM_168315; /// NM_168316;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0016020 // membrane // inferred from electron
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0023479.
Homophila reports that CG4821 is a close match (3e-11) to human gene ELA2 (NP_001963), a gene associated with Hematopoiesis, cyclic, 162800 (3);Neutropenia, congenital, 202700 (3).
BioGrid reports that CG4821 interacts with CG4972 CG5180 CG5441 CG5676 CG5760 CG6283 CG8495 CG9593 CG9637 CG30425 .
TRiP has 1 RNAi stocks for FBgn0023479 available for purchase.
VDRC has 2 RNAi stocks for FBgn0023479 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	369 ± 13	4 of 4	2.20	Up
Head	889 ± 79	4 of 4	5.20	Up
Eye	180 ± 58	4 of 4	1.05	None
Thoracicoabdominal ganglion	300 ± 8	4 of 4	1.80	Up
Salivary gland	15 ± 3	0 of 4	0.09	Down
Crop	26 ± 2	4 of 4	0.20	Down
Midgut	7 ± 1	1 of 4	0.00	Down
Tubule	61 ± 10	3 of 4	0.40	Down
Hindgut	78 ± 5	4 of 4	0.50	Down
Heart	462 ± 46	4 of 4	2.70	Up
Fat body	990 ± 256	4 of 4	5.78	Up
Ovary	3 ± 1	0 of 4	0.00	Down
Testis	3 ± 1	0 of 4	0.00	Down
Male accessory glands	1 ± 0	0 of 4	0.00	Down
Virgin spermatheca	1291 ± 85	4 of 4	7.54	Up
Mated spermatheca	871 ± 60	4 of 4	5.09	Up
Adult carcass	629 ± 56	4 of 4	3.70	Up
Larval CNS	6 ± 1	3 of 4	0.04	Down
Larval Salivary gland	30 ± 3	4 of 4	0.18	Down
Larval midgut	8 ± 1	2 of 4	0.05	Down
Larval tubule	18 ± 3	2 of 4	0.10	Down
Larval hindgut	7 ± 3	0 of 4	0.04	Down
Larval fat body	1185 ± 189	4 of 4	6.90	Up
Larval trachea	7 ± 4	2 of 4	0.04	Down
Larval carcass	8 ± 1	0 of 4	0.05	Down
S2 cells (growing)	1444 ± 49	4 of 4	8.44	Up
Whole fly	171 ± 16	4 of 4

Looking for FBgn0023479. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720