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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0023489 through 18771 annotations produced 1 hits


Munster (Pph13):

Annotation Number : CG2819
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023489
Gbrowse : chr2L:577487-579549 (+) // 100.0 //
Probeset : 1634438_at
Accessions : protein= NP_477330;, nucleotide= NM_057982;
Pathway : DNA-dependent // inferred from electronic annotation /// 0042052 // rhabdomere development // inferred from mutant phen
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
FlyMine data for FBgn0023489.
BDGP gene expression has embryonic in situ data for Pph13: 25 pix of staining in 2 body parts.
Homophila reports that CG2819 is a close match (8e-11) to human gene KTCN;PPCD;PPD;RINX;VSX1 (NP_955457), a gene associated with Corneal dystrophy, hereditary polymorphous posterior, 122000 (3);Craniofacial anomalies, empty sella turcica, corneal endothelial changes, and abnormal retinal and auditory bipolar cells (3);Keratoconus, 148300 (3).
TRiP has 1 RNAi stocks for FBgn0023489 available for purchase.
VDRC has 1 RNAi stocks for FBgn0023489 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 ± 02 of 4 0.80None
Head127 ± 74 of 4 9.30Up
Eye571 ± 254 of 441.88Up
Thoracicoabdominal ganglion1 ± 00 of 4 0.10Down
Salivary gland2 ± 00 of 4 0.15Down
Crop1 ± 00 of 4 0.10Down
Midgut1 ± 00 of 4 0.10Down
Tubule1 ± 00 of 4 0.10Down
Hindgut2 ± 10 of 4 0.20Down
Heart1 ± 00 of 4 0.11Down
Fat body2 ± 20 of 4 0.19Down
Ovary1 ± 00 of 4 0.10Down
Testis1 ± 00 of 4 0.10Down
Male accessory glands1 ± 00 of 4 0.10Down
Virgin spermatheca1 ± 00 of 4 0.10Down
Mated spermatheca1 ± 00 of 4 0.09Down
Adult carcass2 ± 00 of 4 0.10Down
Larval CNS0 ± 00 of 4 0.04Down
Larval Salivary gland2 ± 00 of 4 0.17Down
Larval midgut1 ± 00 of 4 0.11Down
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut1 ± 00 of 4 0.11Down
Larval fat body5 ± 20 of 4 0.40Down
Larval trachea7 ± 121 of 4 0.52None
Larval carcass2 ± 10 of 4 0.15Down
S2 cells (growing)0 ± 00 of 4 0.05Down
Whole fly13 ± 11 of 4

Looking for FBgn0023489. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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