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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0023496 through 18771 annotations produced 1 hits



Lipase 1 (Lip1):

Annotation Number : CG7279
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023496
Gbrowse : chr2L:10699404-10701458 (-) // 100.0 //
Probeset : 1629710_at
Accessions : protein= NP_523540;, nucleotide= NM_078816;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // non-tracea
Interpro : 0004806 // triglyceride lipase activity // inferred from sequence or structural similarity /// 0016298 // lipase activit
FlyMine data for FBgn0023496.
BDGP gene expression has embryonic in situ data for Lip1: 16 pix of staining in 8 body parts.
Homophila reports that CG7279 is a close match (2e-46) to human gene LIPA (NP_000226), a gene associated with Cholesteryl ester storage disease (3);Wolman disease (3).
VDRC has 2 RNAi stocks for FBgn0023496 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.30Down
Head7 04 of 4 0.70None
Eye7 01 of 4 0.78None
Thoracicoabdominal ganglion5 11 of 4 0.50None
Salivary gland20 22 of 4 2.08Up
Crop9 11 of 4 0.90None
Midgut27 24 of 4 2.80Up
Tubule5 10 of 4 0.60Down
Hindgut5 10 of 4 0.50None
Heart5 10 of 4 0.52None
Fat body8 11 of 4 0.84None
Ovary3 01 of 4 0.30Down
Testis12 14 of 4 1.20None
Male accessory glands12 10 of 4 1.20None
Virgin spermatheca6 20 of 4 0.63None
Mated spermatheca4 10 of 4 0.50None
Adult carcass10 31 of 4 1.00None
Larval CNS5 20 of 4 0.51Down
Larval Salivary gland7 11 of 4 0.80None
Larval midgut21 24 of 4 2.19Up
Larval tubule8 22 of 4 0.90None
Larval hindgut12 23 of 4 1.24None
Larval fat body11 11 of 4 1.10None
Larval trachea4 30 of 4 0.46None
Larval carcass9 12 of 4 0.96None
S2 cells (growing)4 10 of 4 0.49Down
Whole fly9 12 of 4

Looking for FBgn0023496. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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