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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0023509 through 18771 annotations produced 1 hits



Myb-interacting protein 130 (mip130):

Annotation Number : CG3480
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023509
Gbrowse : chrX:1802275-1813967 (+) // 100.0 //
Probeset : 1639185_at
Accessions : protein= NP_569958;, nucleotide= NM_130602;
Pathway : 0000785 // chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural simila
Interpro : 0003677 // DNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interactio
FlyMine data for FBgn0023509.
BDGP gene expression has embryonic in situ data for EG:86E4.4: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0023509 available for purchase.
VDRC has 2 RNAi stocks for FBgn0023509 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain55 14 of 4 1.60Up
Head29 14 of 4 0.80None
Eye34 04 of 4 0.97None
Thoracicoabdominal ganglion33 14 of 4 1.00None
Salivary gland55 64 of 4 1.59Up
Crop36 14 of 4 1.00None
Midgut22 24 of 4 0.60None
Tubule27 24 of 4 0.80Down
Hindgut28 14 of 4 0.80None
Heart27 04 of 4 0.78None
Fat body33 54 of 4 0.97None
Ovary83 34 of 4 2.40Up
Testis11 13 of 4 0.30Down
Male accessory glands40 34 of 4 1.20None
Virgin spermatheca17 14 of 4 0.51Down
Mated spermatheca20 04 of 4 0.57Down
Adult carcass33 14 of 4 0.90None
Larval CNS101 124 of 4 2.90Up
Larval Salivary gland64 34 of 4 1.85Up
Larval midgut20 24 of 4 0.59Down
Larval tubule42 14 of 4 1.20None
Larval hindgut38 24 of 4 1.11None
Larval fat body26 44 of 4 0.70None
Larval trachea66 34 of 4 1.90Up
Larval carcass39 34 of 4 1.13None
S2 cells (growing)67 24 of 4 1.92Up
Whole fly35 44 of 4

Looking for FBgn0023509. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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