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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0023511 through 18771 annotations produced 2 hits



CG3810 (Edem1):

Annotation Number : CG3810
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023511
Gbrowse : chrX:1797738-1802860 (-) // 100.0 //
Probeset : 1637602_at
Accessions : protein= NP_569959; /// NP_726777; /// NP_726778;, nucleotide= NM_130603; /// NM_166914; /// NM_166915;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : "0004571 // mannosyl-oligosaccharide 1
FlyMine data for FBgn0023511.
BioGrid reports that CG3810 interacts with CG6424 CG6544 .
VDRC has 2 RNAi stocks for FBgn0023511 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain87 14 of 4 1.30None
Head130 84 of 4 1.90Up
Eye298 154 of 4 4.27Up
Thoracicoabdominal ganglion121 84 of 4 1.70Up
Salivary gland284 114 of 4 4.06Up
Crop95 44 of 4 1.40Up
Midgut72 64 of 4 1.00None
Tubule86 34 of 4 1.20Up
Hindgut77 44 of 4 1.10None
Heart102 44 of 4 1.46Up
Fat body117 114 of 4 1.68Up
Ovary99 24 of 4 1.40Up
Testis23 14 of 4 0.30Down
Male accessory glands736 284 of 410.50Up
Virgin spermatheca252 44 of 4 3.61Up
Mated spermatheca264 74 of 4 3.78Up
Adult carcass82 84 of 4 1.20None
Larval CNS138 134 of 4 1.98Up
Larval Salivary gland264 84 of 4 3.78Up
Larval midgut107 84 of 4 1.54Up
Larval tubule132 74 of 4 1.90Up
Larval hindgut102 14 of 4 1.47Up
Larval fat body129 124 of 4 1.80Up
Larval trachea126 74 of 4 1.80Up
Larval carcass125 54 of 4 1.79Up
S2 cells (growing)398 54 of 4 5.69Up
Whole fly70 64 of 4



CG3810 (Edem1):

Annotation Number : CG3810
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023511
Gbrowse : chrX:1798353-1801680 (-) // 99.22 //
Probeset : 1632200_s_at
Accessions : protein= NP_569959; /// NP_726777; /// NP_726778;, nucleotide= NM_130603; /// NM_166914; /// NM_166915;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : "0004571 // mannosyl-oligosaccharide 1
FlyMine data for FBgn0023511.
BioGrid reports that CG3810 interacts with CG6424 CG6544 .
VDRC has 2 RNAi stocks for FBgn0023511 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain38 14 of 4 0.70Down
Head68 64 of 4 1.20None
Eye199 194 of 4 3.64Up
Thoracicoabdominal ganglion44 04 of 4 0.80None
Salivary gland141 74 of 4 2.58Up
Crop55 24 of 4 1.00None
Midgut37 33 of 4 0.70Down
Tubule43 04 of 4 0.80Down
Hindgut39 04 of 4 0.70Down
Heart57 24 of 4 1.06None
Fat body71 84 of 4 1.30Up
Ovary73 24 of 4 1.30Up
Testis38 44 of 4 0.70Down
Male accessory glands317 284 of 4 5.80Up
Virgin spermatheca47 14 of 4 0.87None
Mated spermatheca47 14 of 4 0.86None
Adult carcass45 04 of 4 0.80None
Larval CNS72 124 of 4 1.32None
Larval Salivary gland117 164 of 4 2.14Up
Larval midgut57 24 of 4 1.04None
Larval tubule65 24 of 4 1.20None
Larval hindgut49 34 of 4 0.90None
Larval fat body46 24 of 4 0.80None
Larval trachea76 134 of 4 1.39Up
Larval carcass57 24 of 4 1.05None
S2 cells (growing)117 84 of 4 2.15Up
Whole fly54 34 of 4

Looking for FBgn0023511. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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