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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0023512 through 18771 annotations produced 1 hits



eIF2B-epsilon (eIF2B-epsilon):

Annotation Number : CG3806
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023512
Gbrowse : chrX:1814113-1816894 (-) // 100.0 //
Probeset : 1624008_at
Accessions : protein= NP_569961; /// NP_996329;, nucleotide= NM_130605; /// NM_206606;
Pathway : 0005829 // cytosol // inferred from sequence or structural similarity /// 0005851 // eukaryotic translation initiation f
Interpro : 0003743 // translation initiation factor activity // inferred from sequence or structural similarity /// 0005085 // guan
FlyMine data for FBgn0023512.
BDGP gene expression has embryonic in situ data for eIF2B-epsilon: 4 pix of staining in 1 body parts.
Homophila reports that CG3806 is a close match (2e-61) to human gene CACH;CLE;EIF2B5;LVWM (NP_003898), a gene associated with Leukoencephalopathy with vanishing white matter, 603896 (3);Ovarioleukodystrophy, 603896 (3).
BioGrid reports that CG3806 interacts with CG8190 .
VDRC has 1 RNAi stocks for FBgn0023512 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain155 ± 24 of 4 0.80Down
Head129 ± 84 of 4 0.70Down
Eye171 ± 114 of 4 0.88None
Thoracicoabdominal ganglion148 ± 24 of 4 0.80Down
Salivary gland192 ± 124 of 4 0.98None
Crop176 ± 114 of 4 0.90None
Midgut129 ± 104 of 4 0.70Down
Tubule280 ± 24 of 4 1.40Up
Hindgut139 ± 34 of 4 0.70Down
Heart120 ± 64 of 4 0.61Down
Fat body184 ± 134 of 4 0.94None
Ovary372 ± 154 of 4 1.90Up
Testis60 ± 54 of 4 0.30Down
Male accessory glands267 ± 164 of 4 1.40Up
Virgin spermatheca235 ± 74 of 4 1.20Up
Mated spermatheca272 ± 214 of 4 1.40Up
Adult carcass117 ± 64 of 4 0.60Down
Larval CNS303 ± 224 of 4 1.55Up
Larval Salivary gland375 ± 164 of 4 1.92Up
Larval midgut121 ± 54 of 4 0.62Down
Larval tubule170 ± 74 of 4 0.90None
Larval hindgut173 ± 14 of 4 0.89None
Larval fat body122 ± 94 of 4 0.60Down
Larval trachea236 ± 314 of 4 1.21None
Larval carcass191 ± 134 of 4 0.98None
S2 cells (growing)182 ± 14 of 4 0.93None
Whole fly195 ± 124 of 4

Looking for FBgn0023512. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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