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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0023513 through 18771 annotations produced 1 hits



(CG14803):

Annotation Number : CG14803
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023513
Gbrowse : chrX:1762820-1766384 (+) // 100.0 //
Probeset : 1635708_at
Accessions : protein= NP_569950;, nucleotide= NM_130594;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0023513.
BDGP gene expression has embryonic in situ data for EG:63B12.9: 9 pix of staining in 2 body parts.
BioGrid reports that CG14803 interacts with CG17650 CG18111 CG6337 CG5010 CG8206 CG9075 CG9296 .
VDRC has 1 RNAi stocks for FBgn0023513 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain23 ± 04 of 4 0.40Down
Head13 ± 13 of 4 0.30Down
Eye17 ± 14 of 4 0.33Down
Thoracicoabdominal ganglion24 ± 24 of 4 0.40Down
Salivary gland28 ± 30 of 4 0.53Down
Crop27 ± 44 of 4 0.50Down
Midgut6 ± 10 of 4 0.10Down
Tubule12 ± 12 of 4 0.20Down
Hindgut19 ± 04 of 4 0.40Down
Heart16 ± 24 of 4 0.31Down
Fat body18 ± 11 of 4 0.35Down
Ovary110 ± 24 of 4 2.10Up
Testis16 ± 03 of 4 0.30Down
Male accessory glands28 ± 12 of 4 0.50Down
Virgin spermatheca9 ± 20 of 4 0.18Down
Mated spermatheca11 ± 00 of 4 0.21Down
Adult carcass18 ± 42 of 4 0.30Down
Larval CNS55 ± 44 of 4 1.04None
Larval Salivary gland69 ± 14 of 4 1.30Up
Larval midgut15 ± 11 of 4 0.30Down
Larval tubule11 ± 04 of 4 0.20Down
Larval hindgut25 ± 24 of 4 0.47Down
Larval fat body13 ± 32 of 4 0.30Down
Larval trachea45 ± 34 of 4 0.85Down
Larval carcass24 ± 34 of 4 0.46Down
S2 cells (growing)79 ± 34 of 4 1.49Up
Whole fly53 ± 24 of 4

Looking for FBgn0023513. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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