FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0023516 through 18771 annotations produced 1 hits

(CG14815):

Annotation Number : CG14815
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023516
Gbrowse : chrX:1760855-1763094 (-) // 100.0 //
Probeset : 1633962_a_at
Accessions : protein= NP_569949; /// NP_726771;, nucleotide= NM_130593; /// NM_166910;
Interpro : 0000268 // peroxisome targeting sequence binding // inferred from sequence or structural similarity /// 0005488 // bindi
FlyMine data for FBgn0023516.
Homophila reports that CG14815 is a close match (2e-78) to human gene PEX5;PTS1R;PXR1 (NP_000310), a gene associated with Adrenoleukodystrophy, neonatal, 202370 (3);Zellweger syndrome, 214100 (3).
BioGrid reports that CG14815 interacts with CG18094 CG31062 CG32556 CG3605 CG4289 CG6178 CG7171 CG8421 CG8704 CG9527 CG9577 CG15879 CG1660 CG17769 CG1856 CG31160 CG3193 CG32672 CG4853 CG5094 CG6193 CG8368 CG8831 .
VDRC has 2 RNAi stocks for FBgn0023516 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	222 ± 4	4 of 4	0.90	None
Head	292 ± 10	4 of 4	1.20	Up
Eye	330 ± 9	4 of 4	1.35	Up
Thoracicoabdominal ganglion	210 ± 6	4 of 4	0.90	None
Salivary gland	182 ± 12	4 of 4	0.74	Down
Crop	683 ± 10	4 of 4	2.80	Up
Midgut	254 ± 7	4 of 4	1.00	None
Tubule	397 ± 35	4 of 4	1.60	Up
Hindgut	426 ± 11	4 of 4	1.70	Up
Heart	499 ± 18	4 of 4	2.04	Up
Fat body	735 ± 82	4 of 4	3.00	Up
Ovary	233 ± 4	4 of 4	1.00	None
Testis	245 ± 3	4 of 4	1.00	None
Male accessory glands	250 ± 6	4 of 4	1.00	None
Virgin spermatheca	564 ± 18	4 of 4	2.30	Up
Mated spermatheca	463 ± 13	4 of 4	1.89	Up
Adult carcass	477 ± 22	4 of 4	1.90	Up
Larval CNS	145 ± 11	4 of 4	0.59	Down
Larval Salivary gland	174 ± 4	4 of 4	0.71	Down
Larval midgut	322 ± 5	4 of 4	1.32	Up
Larval tubule	459 ± 10	4 of 4	1.90	Up
Larval hindgut	188 ± 6	4 of 4	0.77	Down
Larval fat body	431 ± 36	4 of 4	1.80	Up
Larval trachea	151 ± 13	4 of 4	0.62	Down
Larval carcass	174 ± 10	4 of 4	0.71	Down
S2 cells (growing)	163 ± 2	4 of 4	0.66	Down
Whole fly	245 ± 12	4 of 4

Looking for FBgn0023516. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720