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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0023518 through 18771 annotations produced 2 hits



trithorax-related (trr):

Annotation Number : CG3848
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023518
Gbrowse : chrX:1775339-1783808 (-) // 100.0 //
Probeset : 1635103_at
Accessions : protein= NP_525040; /// NP_726773;, nucleotide= NM_080301; /// NM_166911;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005634 //
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // non-traceable author stateme
FlyMine data for FBgn0023518.
Homophila reports that CG3848 is a close match (8e-14) to human gene EHMT1;EUHMTASE1 (NP_079033), a gene associated with Chromosome 9q subtelomeric deletion syndrome, 610253 (3).
BioGrid reports that CG3848 interacts with CG8206 CG1765 CG1765 CG4380 CG5825 .
TRiP has 2 RNAi stocks for FBgn0023518 available for purchase.
VDRC has 2 RNAi stocks for FBgn0023518 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain154 ± 24 of 4 1.90Up
Head66 ± 34 of 4 0.80None
Eye84 ± 14 of 4 1.02None
Thoracicoabdominal ganglion107 ± 54 of 4 1.30Up
Salivary gland100 ± 34 of 4 1.22Up
Crop72 ± 24 of 4 0.90None
Midgut76 ± 34 of 4 0.90None
Tubule57 ± 24 of 4 0.70Down
Hindgut74 ± 24 of 4 0.90None
Heart43 ± 24 of 4 0.53Down
Fat body55 ± 63 of 4 0.67Down
Ovary238 ± 44 of 4 2.90Up
Testis13 ± 10 of 4 0.20Down
Male accessory glands78 ± 24 of 4 1.00None
Virgin spermatheca43 ± 24 of 4 0.53Down
Mated spermatheca46 ± 24 of 4 0.56Down
Adult carcass56 ± 52 of 4 0.70Down
Larval CNS191 ± 44 of 4 2.32Up
Larval Salivary gland183 ± 54 of 4 2.22Up
Larval midgut70 ± 24 of 4 0.84None
Larval tubule70 ± 34 of 4 0.90None
Larval hindgut89 ± 24 of 4 1.07None
Larval fat body61 ± 34 of 4 0.70Down
Larval trachea114 ± 94 of 4 1.38Up
Larval carcass106 ± 34 of 4 1.29Up
S2 cells (growing)151 ± 14 of 4 1.83Up
Whole fly82 ± 54 of 4



trithorax-related (trr):

Annotation Number : CG3848
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023518
Gbrowse : chrX:1776188-1783808 (-) // 100.0 //
Probeset : 1638163_a_at
Accessions : protein= NP_525040; /// NP_726773;, nucleotide= NM_080301; /// NM_166911;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005634 //
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // non-traceable author stateme
FlyMine data for FBgn0023518.
Homophila reports that CG3848 is a close match (8e-14) to human gene EHMT1;EUHMTASE1 (NP_079033), a gene associated with Chromosome 9q subtelomeric deletion syndrome, 610253 (3).
BioGrid reports that CG3848 interacts with CG8206 CG1765 CG1765 CG4380 CG5825 .
TRiP has 2 RNAi stocks for FBgn0023518 available for purchase.
VDRC has 2 RNAi stocks for FBgn0023518 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain52 ± 24 of 4 1.90Up
Head21 ± 11 of 4 0.80None
Eye16 ± 32 of 4 0.59None
Thoracicoabdominal ganglion25 ± 33 of 4 0.90None
Salivary gland37 ± 20 of 4 1.37Up
Crop25 ± 10 of 4 0.90None
Midgut19 ± 40 of 4 0.70None
Tubule10 ± 10 of 4 0.40Down
Hindgut22 ± 10 of 4 0.80None
Heart8 ± 20 of 4 0.30Down
Fat body20 ± 10 of 4 0.74None
Ovary52 ± 14 of 4 1.90Up
Testis19 ± 32 of 4 0.70None
Male accessory glands20 ± 40 of 4 0.70None
Virgin spermatheca5 ± 10 of 4 0.19Down
Mated spermatheca2 ± 00 of 4 0.11Down
Adult carcass18 ± 20 of 4 0.70None
Larval CNS37 ± 24 of 4 1.38Up
Larval Salivary gland36 ± 24 of 4 1.32Up
Larval midgut13 ± 30 of 4 0.49Down
Larval tubule18 ± 30 of 4 0.70None
Larval hindgut23 ± 01 of 4 0.84None
Larval fat body22 ± 20 of 4 0.80None
Larval trachea18 ± 42 of 4 0.69Down
Larval carcass27 ± 31 of 4 1.02None
S2 cells (growing)52 ± 34 of 4 1.91Up
Whole fly27 ± 22 of 4

Looking for FBgn0023518. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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