FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0023520 through 18771 annotations produced 2 hits

CG3857 ():

Annotation Number : AY180918
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : 2768908
Gbrowse :
Probeset : 1638469_s_at
Accessions : protein= NM_206607;, nucleotide= FBgn0023520
Pathway : nonsense-mediated decay // inferred from sequence or structural similarity"
Interpro : 0005622 // intracellular // inferred from sequence or structural similarity
FlyMine data for 2768908.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	678 ± 28	4 of 4	15.10	Up
Head	337 ± 22	4 of 4	7.50	Up
Eye	57 ± 3	4 of 4	1.29	Up
Thoracicoabdominal ganglion	247 ± 6	4 of 4	5.50	Up
Salivary gland	103 ± 4	4 of 4	2.31	Up
Crop	72 ± 10	4 of 4	1.60	None
Midgut	21 ± 2	4 of 4	0.50	Down
Tubule	51 ± 8	4 of 4	1.10	None
Hindgut	111 ± 10	4 of 4	2.50	Up
Heart	42 ± 4	4 of 4	0.95	None
Fat body	94 ± 28	4 of 4	2.10	Up
Ovary	12 ± 1	4 of 4	0.30	Down
Testis	66 ± 3	4 of 4	1.50	Up
Male accessory glands	297 ± 16	4 of 4	6.60	Up
Virgin spermatheca	77 ± 3	4 of 4	1.73	Up
Mated spermatheca	69 ± 7	4 of 4	1.55	Up
Adult carcass	65 ± 5	4 of 4	1.40	Up
Larval CNS	93 ± 18	4 of 4	2.09	Up
Larval Salivary gland	23 ± 3	4 of 4	0.53	Down
Larval midgut	22 ± 2	4 of 4	0.50	Down
Larval tubule	40 ± 3	4 of 4	0.90	None
Larval hindgut	30 ± 3	4 of 4	0.67	Down
Larval fat body	48 ± 8	4 of 4	1.10	None
Larval trachea	27 ± 8	4 of 4	0.62	Down
Larval carcass	21 ± 2	4 of 4	0.47	Down
S2 cells (growing)	89 ± 4	4 of 4	2.00	Up
Whole fly	45 ± 2	4 of 4

(CG3857):

Annotation Number : CT12883
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023520
Gbrowse : chrX:1832523-1834040 (-) // 100.0 //
Probeset : 1623351_at
Accessions : protein= NP_996330;, nucleotide= NM_206607;
Pathway : nonsense-mediated decay // inferred from electronic annotation /// 0000184 // nuclear-transcribed mRNA catabolic proces
Interpro : nonsense-mediated decay // inferred from sequence or structural similarity"
FlyMine data for FBgn0023520.
VDRC has 3 RNAi stocks for FBgn0023520 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	17 ± 1	4 of 4	0.70	Down
Head	9 ± 1	1 of 4	0.40	Down
Eye	8 ± 1	0 of 4	0.35	Down
Thoracicoabdominal ganglion	20 ± 1	1 of 4	0.80	None
Salivary gland	20 ± 1	0 of 4	0.81	None
Crop	18 ± 1	0 of 4	0.70	Down
Midgut	14 ± 1	0 of 4	0.60	Down
Tubule	9 ± 0	0 of 4	0.40	Down
Hindgut	16 ± 1	2 of 4	0.70	Down
Heart	10 ± 1	0 of 4	0.43	Down
Fat body	13 ± 4	1 of 4	0.56	Down
Ovary	41 ± 4	4 of 4	1.70	Up
Testis	14 ± 1	0 of 4	0.60	Down
Male accessory glands	28 ± 1	2 of 4	1.10	None
Virgin spermatheca	5 ± 1	0 of 4	0.22	Down
Mated spermatheca	6 ± 2	0 of 4	0.25	Down
Adult carcass	18 ± 1	0 of 4	0.80	Down
Larval CNS	32 ± 1	4 of 4	1.29	Up
Larval Salivary gland	17 ± 2	0 of 4	0.69	Down
Larval midgut	8 ± 1	0 of 4	0.33	Down
Larval tubule	22 ± 0	1 of 4	0.90	None
Larval hindgut	19 ± 0	4 of 4	0.76	Down
Larval fat body	18 ± 4	0 of 4	0.70	None
Larval trachea	22 ± 2	4 of 4	0.89	None
Larval carcass	18 ± 3	1 of 4	0.74	None
S2 cells (growing)	29 ± 1	4 of 4	1.18	None
Whole fly	25 ± 1	4 of 4

Looking for FBgn0023520. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720