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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0023522 through 18771 annotations produced 1 hits



(CG11596):

Annotation Number : CG11596
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023522
Gbrowse : chrX:1821712-1824552 (+) // 100.0 //
Probeset : 1624489_a_at
Accessions : protein= NP_569963; /// NP_726779; /// NP_726780;, nucleotide= NM_130607; /// NM_166916; /// NM_166917;
FlyMine data for FBgn0023522.
BDGP gene expression has embryonic in situ data for EG:39E1.1: 4 pix of staining in 1 body parts.
BioGrid reports that CG11596 interacts with CG12348 CG1641 CG8171 .
VDRC has 3 RNAi stocks for FBgn0023522 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain114 ± 44 of 4 0.50Down
Head83 ± 44 of 4 0.30Down
Eye76 ± 64 of 4 0.32Down
Thoracicoabdominal ganglion86 ± 114 of 4 0.40Down
Salivary gland128 ± 14 of 4 0.53Down
Crop141 ± 104 of 4 0.60Down
Midgut86 ± 84 of 4 0.40Down
Tubule113 ± 64 of 4 0.50Down
Hindgut66 ± 34 of 4 0.30Down
Heart87 ± 14 of 4 0.36Down
Fat body88 ± 52 of 4 0.36Down
Ovary498 ± 84 of 4 2.10Up
Testis50 ± 54 of 4 0.20Down
Male accessory glands225 ± 94 of 4 0.90None
Virgin spermatheca82 ± 43 of 4 0.34Down
Mated spermatheca88 ± 33 of 4 0.36Down
Adult carcass121 ± 54 of 4 0.50Down
Larval CNS235 ± 54 of 4 0.97None
Larval Salivary gland126 ± 34 of 4 0.52Down
Larval midgut90 ± 74 of 4 0.37Down
Larval tubule71 ± 74 of 4 0.30Down
Larval hindgut56 ± 14 of 4 0.23Down
Larval fat body159 ± 134 of 4 0.70Down
Larval trachea125 ± 114 of 4 0.52Down
Larval carcass102 ± 104 of 4 0.42Down
S2 cells (growing)165 ± 94 of 4 0.68None
Whole fly242 ± 264 of 4

Looking for FBgn0023522. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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