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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0023525 through 18771 annotations produced 1 hits


Annotation Number : CG3191
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023525
Gbrowse : chrX:2144177-2146017 (-) // 99.52 //
Probeset : 1623743_at
Accessions : protein= NP_726804;, nucleotide= NM_166934;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation
FlyMine data for FBgn0023525.
BDGP gene expression has embryonic in situ data for EG:30B8.3: 11 pix of staining in 1 body parts.
Homophila reports that CG3191 is a close match (5e-11) to human gene AVED;TTP1;TTPA (NP_000361), a gene associated with Ataxia with isolated vitamin E deficiency, 277460 (3).
VDRC has 2 RNAi stocks for FBgn0023525 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain158 64 of 4 3.70Up
Head101 74 of 4 2.40Up
Eye63 04 of 4 1.49Up
Thoracicoabdominal ganglion192 54 of 4 4.50Up
Salivary gland56 54 of 4 1.32None
Crop51 34 of 4 1.20None
Midgut84 54 of 4 2.00Up
Tubule93 144 of 4 2.20Up
Hindgut234 54 of 4 5.50Up
Heart109 64 of 4 2.58Up
Fat body118 104 of 4 2.79Up
Ovary10 14 of 4 0.30Down
Testis79 54 of 4 1.90Up
Male accessory glands67 54 of 4 1.60Up
Virgin spermatheca65 34 of 4 1.54Up
Mated spermatheca82 84 of 4 1.94Up
Adult carcass123 54 of 4 2.90Up
Larval CNS16 34 of 4 0.40Down
Larval Salivary gland15 04 of 4 0.37Down
Larval midgut25 24 of 4 0.60Down
Larval tubule16 04 of 4 0.40Down
Larval hindgut62 44 of 4 1.46Up
Larval fat body23 34 of 4 0.60Down
Larval trachea368 934 of 4 8.66Up
Larval carcass113 104 of 4 2.68Up
S2 cells (growing)34 24 of 4 0.82None
Whole fly42 34 of 4

Looking for FBgn0023525. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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